Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OG965_RS28865 Genome accession   NZ_CP108106
Coordinates   6435479..6436690 (+) Length   403 a.a.
NCBI ID   WP_371654962.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00224     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6430479..6441690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG965_RS28850 (OG965_28785) - 6431347..6432765 (+) 1419 WP_371654959.1 sugar porter family MFS transporter -
  OG965_RS28855 (OG965_28790) - 6432807..6433778 (-) 972 WP_371654960.1 LLM class flavin-dependent oxidoreductase -
  OG965_RS28860 (OG965_28795) - 6433838..6435289 (-) 1452 WP_371654961.1 cytosine permease -
  OG965_RS28865 (OG965_28800) pilA 6435479..6436690 (+) 1212 WP_371654962.1 signal recognition particle-docking protein FtsY Machinery gene
  OG965_RS28870 (OG965_28805) - 6436780..6437427 (-) 648 WP_371654963.1 bifunctional DNA primase/polymerase -
  OG965_RS28875 (OG965_28810) - 6437857..6439332 (+) 1476 WP_371654964.1 hypothetical protein -
  OG965_RS28880 (OG965_28815) - 6439665..6441008 (+) 1344 WP_371654965.1 ammonium transporter -
  OG965_RS28885 (OG965_28820) - 6441005..6441343 (+) 339 WP_101390346.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 42180.32 Da        Isoelectric Point: 4.4537

>NTDB_id=653884 OG965_RS28865 WP_371654962.1 6435479..6436690(+) (pilA) [Streptomyces sp. NBC_00224]
MEFVILAVVIALVAVGVISGLVVSSRKKKQLPPTAPPSTPTITAPPAEPHVGEDAAETAEEQRRTIEEVALPEAPASPVV
EEALPEAPAAPEIEVPEPTAGRLVRLRARLARSQNSLGKGLLTLLSRDNLDEDTWEEIEDTLLTADVGVAPTQELVERLR
ERVRVLGTRTPAELRTLLREELVALLGPDLDRTVKTEGGLESPGVVMVVGVNGTGKTTTTGKLARVLVADGKSVVLGAAD
TFRAAAADQLQTWGERVGARTVRGPEGGDPASIAFDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHGPL
DEILLVLDATTGQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLIGLGEGADDLAPFEPGAFVDAL
IGD

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=653884 OG965_RS28865 WP_371654962.1 6435479..6436690(+) (pilA) [Streptomyces sp. NBC_00224]
ATGGAATTCGTCATCCTTGCTGTAGTCATCGCCCTGGTCGCGGTCGGCGTGATCAGCGGGCTCGTGGTCAGCAGCCGCAA
GAAGAAGCAGCTGCCCCCCACGGCTCCGCCGTCCACGCCGACCATCACTGCCCCGCCCGCCGAGCCTCACGTCGGCGAAG
ACGCCGCGGAGACGGCCGAGGAGCAACGCCGCACGATCGAGGAGGTCGCCCTCCCCGAGGCCCCGGCGAGCCCCGTCGTC
GAGGAGGCGCTTCCCGAGGCGCCCGCCGCGCCCGAGATCGAGGTGCCCGAGCCGACGGCCGGCCGCCTCGTACGGCTGCG
CGCCCGGCTCGCCCGCTCCCAGAACTCGCTGGGCAAGGGGCTCCTCACGCTGCTCTCCCGGGACAACCTCGACGAGGACA
CCTGGGAGGAGATCGAGGACACCCTGCTCACCGCGGACGTCGGCGTCGCCCCGACCCAGGAGCTGGTCGAGCGGCTGCGC
GAGCGCGTCCGGGTGCTCGGCACCCGCACCCCCGCCGAACTGCGCACCCTGCTGCGCGAGGAGCTCGTGGCGCTGCTCGG
CCCGGACCTCGACCGCACGGTGAAGACCGAGGGCGGCCTGGAGAGCCCCGGTGTCGTCATGGTCGTCGGGGTCAACGGCA
CCGGCAAGACCACCACCACCGGCAAGCTCGCGCGCGTCCTCGTCGCCGACGGCAAGTCGGTCGTCCTGGGCGCGGCGGAC
ACCTTCCGCGCGGCCGCCGCCGACCAGCTGCAGACCTGGGGTGAGCGCGTCGGCGCCCGCACCGTGCGCGGCCCCGAGGG
CGGCGACCCGGCGTCGATCGCCTTCGACGCGGTCAAGGAGGGCATCGCGGAGGGCGCGGACGTCGTCCTCATCGACACCG
CGGGCCGGCTGCACACCAAGACCGGGCTCATGGACGAGCTCGGCAAGGTCAAGCGCGTCGTGGAGAAGCACGGCCCGCTG
GACGAGATCCTGCTGGTCCTCGACGCCACCACCGGACAGAACGGGCTGGTCCAGGCCCGCGTCTTCGCCGAGGTCGTCGA
CATCACCGGCATCGTCCTCACCAAGCTCGACGGCACCGCCAAGGGCGGCATCGTCATCGCCGTCCAGCGCGAGCTCGGCG
TCCCGGTCAAGCTCATCGGCCTCGGCGAGGGTGCGGACGACCTGGCGCCGTTCGAGCCGGGGGCGTTCGTGGACGCGCTC
ATCGGCGACTAG

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(117-182)

SRP54-type protein, GTPase domain (SRP54)

(204-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

43.681

90.323

0.395