Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   L7H22_RS00460 Genome accession   NZ_CP091839
Coordinates   98718..99347 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain SWYHX138.261ft     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 93718..104347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L7H22_RS00440 (L7H22_00440) ycbZ 94119..95879 (-) 1761 WP_000156518.1 AAA family ATPase -
  L7H22_RS00445 (L7H22_00445) matP 96065..96517 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  L7H22_RS00450 (L7H22_00450) ompA 96593..97633 (-) 1041 WP_000750416.1 porin OmpA -
  L7H22_RS00455 (L7H22_00455) sulA 97990..98499 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  L7H22_RS00460 (L7H22_00460) sxy/tfoX 98718..99347 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  L7H22_RS00465 (L7H22_00465) yccS 99310..101472 (-) 2163 WP_238059114.1 YccS family putative transporter -
  L7H22_RS00470 (L7H22_00470) yccF 101482..101928 (-) 447 WP_001261235.1 YccF domain-containing protein -
  L7H22_RS00475 (L7H22_00475) helD 102051..104105 (+) 2055 WP_238059233.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=653840 L7H22_RS00460 WP_000839153.1 98718..99347(+) (sxy/tfoX) [Escherichia coli strain SWYHX138.261ft]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=653840 L7H22_RS00460 WP_000839153.1 98718..99347(+) (sxy/tfoX) [Escherichia coli strain SWYHX138.261ft]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1