Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   L7H17_RS00465 Genome accession   NZ_CP091836
Coordinates   98738..99367 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain SWYHX138.33gt     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 93738..104367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L7H17_RS00445 (L7H17_00445) ycbZ 94139..95899 (-) 1761 WP_000156518.1 AAA family ATPase -
  L7H17_RS00450 (L7H17_00450) matP 96085..96537 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  L7H17_RS00455 (L7H17_00455) ompA 96613..97653 (-) 1041 WP_000750416.1 porin OmpA -
  L7H17_RS00460 (L7H17_00460) sulA 98010..98519 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  L7H17_RS00465 (L7H17_00465) sxy/tfoX 98738..99367 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  L7H17_RS00470 (L7H17_00470) yccS 99330..101492 (-) 2163 WP_238059114.1 YccS family putative transporter -
  L7H17_RS00475 (L7H17_00475) yccF 101502..101948 (-) 447 WP_001261235.1 YccF domain-containing protein -
  L7H17_RS00480 (L7H17_00480) helD 102071..104125 (+) 2055 WP_238059233.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=653818 L7H17_RS00465 WP_000839153.1 98738..99367(+) (sxy/tfoX) [Escherichia coli strain SWYHX138.33gt]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=653818 L7H17_RS00465 WP_000839153.1 98738..99367(+) (sxy/tfoX) [Escherichia coli strain SWYHX138.33gt]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1