Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   K6119_RS10395 Genome accession   NZ_CP091819
Coordinates   2273410..2274774 (+) Length   454 a.a.
NCBI ID   WP_221838808.1    Uniprot ID   -
Organism   Paracrocinitomix mangrovi strain GM2-3-6-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2268410..2279774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6119_RS10375 (K6119_10375) - 2269184..2270053 (+) 870 WP_221838804.1 bestrophin family protein -
  K6119_RS10380 (K6119_10380) - 2270043..2271740 (-) 1698 WP_221838805.1 toxin-antitoxin system YwqK family antitoxin -
  K6119_RS10385 (K6119_10385) - 2271783..2272448 (-) 666 WP_221838806.1 LysE family translocator -
  K6119_RS10390 (K6119_10390) - 2272516..2273289 (-) 774 WP_221838807.1 exodeoxyribonuclease III -
  K6119_RS10395 (K6119_10395) radA 2273410..2274774 (+) 1365 WP_221838808.1 DNA repair protein RadA Machinery gene
  K6119_RS10400 (K6119_10400) - 2274848..2277145 (+) 2298 WP_221838810.1 two-component regulator propeller domain-containing protein -
  K6119_RS10405 (K6119_10405) recO 2277148..2277861 (+) 714 WP_221838812.1 DNA repair protein RecO -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49858.38 Da        Isoelectric Point: 6.4026

>NTDB_id=653780 K6119_RS10395 WP_221838808.1 2273410..2274774(+) (radA) [Paracrocinitomix mangrovi strain GM2-3-6-6]
MAKVKTSFFCQNCGAESPKWVGKCASCNEWNTYVEEVIDRPKSATPFSSSSSQRASKAHSLNEIEKKIERRIELKDVELN
RVLGGGMVPGSLILFGGEPGIGKSTLLLQMAIQETDKKILYISGEESEQQIKMRADRIGIGNDNCFVLTETSMQNVFLQI
EAVEPDILIIDSVQTMHSQNIESSPGSISQIRECTAELLRYAKESGTPVFLVGHITKEGSLAGPKVLEHMVDTVLVFEGD
RNHVYRIIRSVKNRFGSTNELGIYEMHGAGLRVVENPSEILLSNNEENLSGISIASTLEGIRPIMVEVQALVSTAAYGTP
QRSSTGYDLRRLNMLLAVLEKRCGFKLGAKDVFLNIAGGIKVNDPAIDLAVVCAIMSSNANIPINKKISLSAEISLSGEI
KPVNRMDQRISEAQKLGMEQIIISKYNKGIHQKDFEIEIVKVGKIEDAIRAIFG

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=653780 K6119_RS10395 WP_221838808.1 2273410..2274774(+) (radA) [Paracrocinitomix mangrovi strain GM2-3-6-6]
ATGGCCAAGGTTAAAACATCATTTTTTTGTCAGAATTGTGGAGCTGAATCTCCCAAATGGGTTGGAAAATGTGCTTCATG
TAATGAATGGAACACCTATGTTGAAGAGGTAATCGACAGACCAAAAAGTGCAACTCCTTTTTCTTCATCCAGTTCACAAC
GTGCGTCAAAAGCTCACAGTTTAAATGAAATTGAAAAGAAAATTGAGCGCAGAATTGAATTAAAAGATGTAGAACTTAAC
CGTGTGTTAGGAGGTGGAATGGTTCCCGGTTCATTAATTCTTTTTGGTGGTGAACCCGGAATTGGAAAATCCACTTTATT
ACTTCAAATGGCCATTCAAGAGACTGATAAAAAAATACTCTATATATCTGGTGAAGAAAGTGAGCAGCAAATTAAAATGA
GAGCTGATAGAATTGGAATTGGCAATGACAATTGTTTTGTTTTGACTGAAACTTCTATGCAAAATGTGTTTCTGCAAATT
GAAGCCGTTGAACCTGACATTCTGATTATTGATTCTGTTCAAACTATGCATTCACAAAACATTGAATCTTCACCCGGAAG
TATTTCGCAAATCAGAGAGTGTACAGCTGAATTGTTACGATATGCAAAAGAATCTGGTACACCGGTGTTTTTAGTTGGAC
ACATTACCAAAGAAGGCTCACTTGCAGGTCCAAAGGTATTAGAACACATGGTGGATACTGTCTTGGTTTTTGAAGGAGAC
AGAAATCATGTTTACCGCATCATTAGAAGTGTAAAAAATAGATTTGGATCTACGAATGAATTAGGGATTTATGAAATGCA
TGGTGCCGGTTTACGTGTAGTTGAAAATCCATCTGAAATTTTACTCTCCAATAATGAAGAAAATTTATCCGGGATTTCAA
TTGCTTCTACTTTAGAGGGAATTCGTCCAATAATGGTTGAAGTTCAGGCTTTGGTTAGCACTGCGGCATACGGTACACCT
CAACGTTCTTCTACAGGTTATGACTTGCGAAGGTTAAACATGCTTTTAGCAGTTCTTGAAAAAAGATGCGGATTTAAATT
AGGCGCAAAAGATGTTTTCCTAAATATTGCGGGCGGAATTAAAGTGAATGATCCGGCTATTGATTTGGCTGTAGTTTGTG
CTATCATGTCATCTAACGCCAATATTCCAATTAACAAAAAAATCAGTTTGTCTGCCGAAATCAGTTTATCCGGAGAAATA
AAGCCGGTTAACAGAATGGACCAACGTATTTCAGAAGCTCAGAAATTAGGAATGGAGCAGATTATCATTTCAAAATACAA
CAAGGGGATTCACCAAAAAGATTTTGAAATTGAAATTGTCAAAGTTGGAAAAATTGAAGACGCAATCAGAGCTATTTTTG
GATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(78-219)

Subunit ChlI of Mg-chelatase (ChlI)

(341-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.328

100

0.507
  radA Streptococcus pneumoniae Rx1

48.571

100

0.487
  radA Streptococcus pneumoniae R6

48.571

100

0.487
  radA Streptococcus pneumoniae TIGR4

48.571

100

0.487
  radA Streptococcus pneumoniae D39

48.571

100

0.487
  radA Streptococcus mitis NCTC 12261

48.238

100

0.482
  radA Streptococcus mitis SK321

48.238

100

0.482