Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG537_RS18560 Genome accession   NZ_CP108102
Coordinates   4295213..4296211 (-) Length   332 a.a.
NCBI ID   WP_328829870.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00228     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4290213..4301211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG537_RS18545 (OG537_18520) - 4291455..4293008 (-) 1554 WP_328932974.1 MFS transporter -
  OG537_RS18550 (OG537_18525) - 4293177..4294148 (+) 972 WP_328932975.1 YafY family protein -
  OG537_RS18555 (OG537_18530) - 4294156..4294782 (-) 627 WP_328936096.1 helix-turn-helix domain-containing protein -
  OG537_RS18560 (OG537_18535) rpoS 4295213..4296211 (-) 999 WP_328829870.1 sigma-70 family RNA polymerase sigma factor Regulator
  OG537_RS18565 (OG537_18540) - 4296382..4296912 (+) 531 WP_328932976.1 N-acetyltransferase family protein -
  OG537_RS18570 (OG537_18545) - 4296953..4297756 (-) 804 WP_328932977.1 class III extradiol ring-cleavage dioxygenase -
  OG537_RS18575 (OG537_18550) - 4297867..4298379 (+) 513 WP_328932978.1 MarR family transcriptional regulator -
  OG537_RS18580 (OG537_18555) - 4298491..4300053 (-) 1563 WP_328829875.1 MFS transporter -
  OG537_RS18585 (OG537_18560) - 4300205..4300849 (-) 645 WP_266771369.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37206.91 Da        Isoelectric Point: 5.2586

>NTDB_id=653763 OG537_RS18560 WP_328829870.1 4295213..4296211(-) (rpoS) [Streptomyces sp. NBC_00228]
MATRAVARRKSATGETSDAARSVRAHGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVFARQVLEGEEKSQAD
ASRAELEALVAEGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNRKNGREPEHAEIAAELDSTPERVTDVLDWARDPVSLNMSVDDDGDTQF
GDLLEDTSAVSPEQSVMTLLRSEELDDLIGRLDQRTASIIKMRYGIEDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLASQTGFDAAA

Nucleotide


Download         Length: 999 bp        

>NTDB_id=653763 OG537_RS18560 WP_328829870.1 4295213..4296211(-) (rpoS) [Streptomyces sp. NBC_00228]
ATGGCAACCCGTGCCGTCGCCCGTCGTAAGTCCGCCACCGGCGAGACCTCCGACGCGGCACGCAGTGTTCGCGCCCATGG
CGGCGAGATCGCCGACCGCGACCTGGTCGGCATGTATCTCGACGAAATCGCGCGTACACCGCTGCTCGACGCCGCAAAGG
AAGTCGAGCTTTCGCAGACCATCGAAGCGGGCGTGTTCGCGCGCCAGGTTCTCGAGGGCGAGGAGAAGTCCCAGGCGGAC
GCCTCCCGCGCCGAGCTCGAGGCCCTGGTCGCCGAAGGGGAGCGTGCCAAGGACGTCTTCATCCGTTCCAACCTCCGCCT
GGTCGTGGCCGTGGCCCGCCGTTACCCCCGTAGCGGCCTGCCCCTCCTCGACCTGATCCAGGAGGGCAACGCGGGCCTGG
TCCGCGCCGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCGACCTGGTGGATCCGCCAGGCCATC
ACCCGCTCCATCGCCGACCAGTCCCGGACCATCCGGCTCCCCGTCCACCTGGTGGAGGAGCTGGGCCGCATCCGCCGAGT
GCAGCGCGAGTTCAACCGGAAGAACGGCCGGGAGCCCGAGCACGCGGAGATCGCCGCGGAGCTGGACTCGACGCCGGAGC
GCGTGACCGACGTGCTCGACTGGGCCCGTGACCCGGTCTCGCTGAACATGTCGGTGGACGACGACGGCGACACCCAGTTC
GGCGACCTCCTGGAGGACACCTCCGCGGTCTCGCCCGAGCAGTCCGTCATGACCCTGCTGCGCAGCGAGGAGCTGGACGA
TCTGATCGGCCGGCTCGACCAGCGCACGGCGTCCATCATCAAGATGCGGTACGGCATCGAGGACGGCCGTGAGCGGACGC
TGACGGAGGTCGGCAAGGAGCACGGGCTGACGCGGGAGCGGATCCGGCAGATCGAGAAGCACGCGTTGCTGGAGCTGAAG
AAGCTGGCGAGCCAGACCGGGTTCGACGCGGCGGCGTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(100-169)

Sigma-70, region 4 (Sigma70_r4)

(269-321)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(34-67)

Sigma-70 region 3 (Sigma70_r3)

(179-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.468

90.06

0.364