Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG537_RS15655 Genome accession   NZ_CP108102
Coordinates   3648728..3649342 (-) Length   204 a.a.
NCBI ID   WP_328829278.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00228     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3643728..3654342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG537_RS15630 (OG537_15605) - 3644536..3644988 (+) 453 WP_266772198.1 ATP-binding protein -
  OG537_RS15635 (OG537_15610) - 3645046..3646140 (-) 1095 WP_328932667.1 bifunctional succinyldiaminopimelate transaminase/glutamate-prephenate aminotransferase -
  OG537_RS15640 (OG537_15615) fdxA 3646299..3646619 (-) 321 WP_019058397.1 ferredoxin -
  OG537_RS15645 (OG537_15620) - 3646760..3647755 (+) 996 WP_328932668.1 GNAT family N-acetyltransferase -
  OG537_RS15650 (OG537_15625) - 3647752..3648618 (+) 867 WP_328932669.1 transglutaminase-like domain-containing protein -
  OG537_RS15655 (OG537_15630) vraR 3648728..3649342 (-) 615 WP_328829278.1 response regulator transcription factor Regulator
  OG537_RS15660 (OG537_15635) - 3649339..3650538 (-) 1200 WP_328936085.1 histidine kinase -
  OG537_RS15665 (OG537_15640) - 3650544..3651284 (-) 741 WP_328932670.1 ABC transporter permease -
  OG537_RS15670 (OG537_15645) - 3651281..3652207 (-) 927 WP_328932671.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 21486.75 Da        Isoelectric Point: 6.1157

>NTDB_id=653755 OG537_RS15655 WP_328829278.1 3648728..3649342(-) (vraR) [Streptomyces sp. NBC_00228]
MSRTIKVLLAEDQSMVREALAALLGLEDDIEVVAQVARGDEVLAAARHHTVDVALLDIEMPGCTGIEAAAQVHKALPGVK
LVVLTTFGRPGYLRSAMEAGADAFLVKDAPAAQLAAAVRKVLAGERVIDPTLAAAALAEGANPLTDREREVLRAAADGST
NAELATALHLSQGTVRNYLSTAIQKLAVRNRAEAVRIAREKGWL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=653755 OG537_RS15655 WP_328829278.1 3648728..3649342(-) (vraR) [Streptomyces sp. NBC_00228]
ATGAGCCGTACGATCAAGGTCCTCCTCGCCGAGGACCAGTCGATGGTCCGCGAGGCACTGGCCGCCCTGCTCGGCCTGGA
GGACGACATCGAGGTCGTCGCCCAAGTCGCCCGCGGCGACGAGGTGTTGGCAGCGGCACGGCACCACACCGTGGACGTGG
CCCTCCTCGACATCGAAATGCCCGGCTGCACCGGCATCGAGGCGGCGGCCCAGGTCCACAAGGCGCTCCCCGGGGTGAAG
CTGGTCGTCCTGACGACCTTCGGCCGCCCCGGCTACCTCCGCAGCGCGATGGAGGCGGGAGCGGACGCCTTCCTCGTGAA
GGACGCCCCGGCGGCCCAACTGGCGGCAGCGGTACGGAAGGTACTCGCCGGGGAGCGGGTCATCGACCCCACCTTGGCCG
CGGCGGCTCTGGCGGAGGGCGCCAACCCGCTGACCGACCGCGAACGGGAAGTACTCAGGGCAGCGGCGGACGGCTCGACG
AACGCGGAACTGGCAACGGCCCTCCACCTGTCCCAGGGCACGGTCCGCAACTACCTGTCGACAGCGATCCAGAAGCTGGC
GGTACGGAACAGGGCAGAGGCGGTAAGGATCGCAAGGGAAAAAGGCTGGCTGTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(143-198)

Response regulator receiver domain (Response_reg)

(7-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.232

100

0.368