Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   L6310_RS15685 Genome accession   NZ_CP091809
Coordinates   3229129..3229743 (-) Length   204 a.a.
NCBI ID   WP_003831996.1    Uniprot ID   A0A5A9E513
Organism   Citrobacter portucalensis strain 56322CZ     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3224129..3234743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6310_RS15670 (L6310_15670) helD 3224353..3226407 (-) 2055 WP_195995546.1 DNA helicase IV -
  L6310_RS15675 (L6310_15675) - 3226533..3226979 (+) 447 WP_003831998.1 YccF domain-containing protein -
  L6310_RS15680 (L6310_15680) yccS 3226998..3229151 (+) 2154 WP_195995544.1 YccS family putative transporter -
  L6310_RS15685 (L6310_15685) sxy/tfoX 3229129..3229743 (-) 615 WP_003831996.1 TfoX/Sxy family DNA transformation protein Regulator
  L6310_RS15690 (L6310_15690) sulA 3229961..3230470 (+) 510 WP_195995542.1 SOS-induced cell division inhibitor SulA -
  L6310_RS15695 (L6310_15695) ompA 3230828..3231886 (+) 1059 WP_071444983.1 porin OmpA -
  L6310_RS15700 (L6310_15700) matP 3231975..3232427 (-) 453 WP_032942905.1 macrodomain Ter protein MatP -
  L6310_RS15705 (L6310_15705) - 3232613..3234373 (+) 1761 WP_048227018.1 AAA family ATPase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23168.54 Da        Isoelectric Point: 8.6049

>NTDB_id=653745 L6310_RS15685 WP_003831996.1 3229129..3229743(-) (sxy/tfoX) [Citrobacter portucalensis strain 56322CZ]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=653745 L6310_RS15685 WP_003831996.1 3229129..3229743(-) (sxy/tfoX) [Citrobacter portucalensis strain 56322CZ]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGCTGTATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGCGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAGCTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAGAAACAAAGTCGCTTTGCCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGTTGA
ATGAAGCTGGAATTAAAGATGAGGGGACCATGCGATCGTTGGGAGCACAAATGTGCTGGCTGAAACTTAGGCAAAATAAT
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTTGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5A9E513

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

67.647

100

0.676