Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG537_RS11885 Genome accession   NZ_CP108102
Coordinates   2783214..2783993 (+) Length   259 a.a.
NCBI ID   WP_026151025.1    Uniprot ID   A0ABU4FGW0
Organism   Streptomyces sp. NBC_00228     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2778214..2788993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG537_RS11875 (OG537_11850) - 2779037..2781931 (-) 2895 WP_328932311.1 vitamin B12-dependent ribonucleotide reductase -
  OG537_RS11880 (OG537_11855) nrdR 2782097..2782648 (-) 552 WP_266776797.1 transcriptional regulator NrdR -
  OG537_RS11885 (OG537_11860) dinR/lexA 2783214..2783993 (+) 780 WP_026151025.1 transcriptional repressor LexA Regulator
  OG537_RS11890 (OG537_11865) - 2784133..2786178 (-) 2046 WP_328932312.1 ATP-dependent DNA helicase -
  OG537_RS11895 (OG537_11870) - 2786575..2787492 (-) 918 WP_328932313.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28037.72 Da        Isoelectric Point: 7.0668

>NTDB_id=653744 OG537_RS11885 WP_026151025.1 2783214..2783993(+) (dinR/lexA) [Streptomyces sp. NBC_00228]
MTTTADSATITAQDRSQGRLEPVHAMNEAANPEGHKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQSSSVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLEGEATVKRFKREDGHVWLLPHNSAYEP
IPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=653744 OG537_RS11885 WP_026151025.1 2783214..2783993(+) (dinR/lexA) [Streptomyces sp. NBC_00228]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGATCGCTCCCAGGGCCGACTCGAGCCGGTGCATGCAATGAA
CGAAGCCGCGAATCCCGAGGGACACAAGCGCTCCCTACCGGGCCGACCTCCCGGTATCCGGGCGGACAGCTCGGGGCTCA
CGGACCGGCAGCGCCGGGTGATCGAGGTCATCAGGGACTCGGTGCAGCGACGGGGATACCCGCCGTCGATGCGCGAGATC
GGCCAGGCCGTGGGCCTGTCCAGCACATCCTCGGTCGCACACCAGCTGATGGCACTGGAGCGCAAGGGCTTCCTGCGCCG
CGACCCGCACCGCCCGCGCGCGTACGAGGTCCGCGGTTCCGACCAGTCCTCGTCGGTGCAGCCCACGGACACTGCGGGCA
AGCCCGCCGCGTCGTACGTCCCTCTGGTGGGCCGGATCGCCGCCGGTGGCCCGATCCTCGCCGAGGAGTCGGTCGAGGAC
GTCTTCCCCCTCCCCCGCCAACTGGTCGGTGACGGTGAGCTGTTCGTCCTGAAGGTTGTCGGTGACTCGATGATCGAGGC
CGCGATCTGCGACGGCGACTGGGTCACCGTGCGCCGCCAGCCGGTCGCCGAGAACGGCGACATCGTCGCCGCCATGCTCG
AGGGCGAGGCCACCGTCAAGCGCTTCAAGCGCGAGGACGGCCACGTCTGGCTCCTCCCGCACAACTCGGCCTACGAGCCG
ATCCCCGGCGACGACGCGACGATCCTCGGCAAGGTGGTGGCAGTGCTGCGGCGCGTGTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(51-114)

Peptidase S24-like (Peptidase_S24)

(141-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.972

81.467

0.375