Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   L7H25_RS16680 Genome accession   NZ_CP091805
Coordinates   3378241..3378837 (-) Length   198 a.a.
NCBI ID   WP_048323585.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae strain 21223     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3373241..3383837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L7H25_RS16665 (L7H25_16665) helD 3373452..3375506 (-) 2055 WP_065904894.1 DNA helicase IV -
  L7H25_RS16670 (L7H25_16670) - 3375631..3376077 (+) 447 WP_004201437.1 YccF domain-containing protein -
  L7H25_RS16675 (L7H25_16675) yccS 3376095..3378230 (+) 2136 WP_065904896.1 YccS family putative transporter -
  L7H25_RS16680 (L7H25_16680) sxy/tfoX 3378241..3378837 (-) 597 WP_048323585.1 TfoX/Sxy family DNA transformation protein Regulator
  L7H25_RS16685 (L7H25_16685) - 3378855..3379160 (-) 306 WP_158238036.1 hypothetical protein -
  L7H25_RS16690 (L7H25_16690) sulA 3379186..3379695 (+) 510 WP_017899460.1 SOS-induced cell division inhibitor SulA -
  L7H25_RS16695 (L7H25_16695) ompA 3380048..3381124 (+) 1077 WP_268199001.1 porin OmpA -
  L7H25_RS16700 (L7H25_16700) matP 3381318..3381770 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  L7H25_RS16705 (L7H25_16705) - 3381956..3383713 (+) 1758 WP_065904898.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22579.34 Da        Isoelectric Point: 10.2936

>NTDB_id=653720 L7H25_RS16680 WP_048323585.1 3378241..3378837(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain 21223]
MKKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKCRRRSSARLKDLPNISFHMELQLIHSGIPDVLALRQVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWAAAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=653720 L7H25_RS16680 WP_048323585.1 3378241..3378837(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain 21223]
ATGAAAAAACTTGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTTCACTCTCGCCCCCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGAAATATTTATCTGAAAGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGCTGCGCCGACATGGGCGCATCGTGCCGCTAAAG
TATTATCAAATTGACGATGCCTTGTGGCGCGATGAGAAACAGCTTTTCCGCTTATCGCTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATGTCGCCGCCGGTCGTCGGCACGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATACCAGACGTGTTAGCACTACGGCAGGTGGGCGCCCGCCAGGCCTGGCTAAAGCTGCGTGAGAACAAT
GCTTCCCTATCACACAACGTCTTGCTGGCGCTGGAGGGGGCTATCGTTGGCGTCCATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGGCTGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.769

98.485

0.5