Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG230_RS26610 Genome accession   NZ_CP108101
Coordinates   6037365..6038162 (-) Length   265 a.a.
NCBI ID   WP_328906237.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00234     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6032365..6043162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG230_RS26595 (OG230_26595) - 6032583..6033308 (+) 726 WP_328906234.1 GNAT family N-acetyltransferase -
  OG230_RS26600 (OG230_26600) - 6033369..6035264 (+) 1896 WP_328906235.1 IucA/IucC family siderophore biosynthesis protein -
  OG230_RS26605 (OG230_26605) - 6035303..6037273 (+) 1971 WP_328906236.1 ATP-dependent DNA helicase -
  OG230_RS26610 (OG230_26610) dinR/lexA 6037365..6038162 (-) 798 WP_328906237.1 transcriptional repressor LexA Regulator
  OG230_RS26615 (OG230_26615) nrdR 6038662..6039174 (+) 513 WP_328906238.1 transcriptional regulator NrdR -
  OG230_RS26620 (OG230_26620) - 6039333..6042239 (+) 2907 WP_328906239.1 vitamin B12-dependent ribonucleotide reductase -
  OG230_RS26625 (OG230_26625) - 6042355..6042891 (-) 537 WP_328906240.1 TerD family protein -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 28808.57 Da        Isoelectric Point: 7.0667

>NTDB_id=653713 OG230_RS26610 WP_328906237.1 6037365..6038162(-) (dinR/lexA) [Streptomyces sp. NBC_00234]
MTTTADSATITAQDHRSQSRLEPVHAMNDSVMNTEGQEPARPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGY
PPSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILA
EESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPH
NSAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 798 bp        

>NTDB_id=653713 OG230_RS26610 WP_328906237.1 6037365..6038162(-) (dinR/lexA) [Streptomyces sp. NBC_00234]
GTGACCACCACCGCAGACAGCGCCACCATCACTGCCCAGGACCACCGCTCCCAGAGCCGACTTGAGCCGGTGCATGCAAT
GAATGACTCAGTCATGAACACGGAGGGGCAGGAGCCCGCGCGTCCCGCGCGTTCCCTGCCCGGCCGCCCACCAGGAATCC
GGGCGGACAGCTCCGGGCTCACGGACCGGCAGCGGCGGGTGATCGAGGTCATTCGCGATTCGGTTCAGCGCCGAGGGTAC
CCGCCCTCGATGCGGGAGATCGGCCAGGCGGTGGGGCTGTCCAGCACGTCGTCCGTCGCTCATCAGCTGATGGCTCTGGA
GCGCAAGGGCTTCCTGCGCCGCGACCCCCACCGGCCCCGTGCCTACGAGGTCCGCGGTTCGGATCAGCCCAGCACCCAGC
CGACCGACACGACGGGCAAGCCCGCCGCTTCGTACGTCCCGCTGGTCGGCCGGATCGCGGCCGGTGGCCCGATCCTCGCC
GAGGAATCGGTCGAGGACGTCTTCCCGCTCCCCCGCCAGCTGGTGGGCGACGGAGAGCTGTTCGTCCTCAAGGTCGTCGG
TGACTCGATGATCGAGGCCGCGATCTGTGACGGCGACTGGGTCACGGTCCGGCGCCAGCCGGTCGCGGAGAACGGGGACA
TCGTGGCGGCCATGCTGGACGGCGAGGCCACGGTCAAGCGGTTCAAGCGCGAGGACGGTCACGTGTGGCTCCTGCCGCAC
AACTCCGCGTACCAGCCGATCCCCGGCGACGAGGCCACCATTCTCGGCAAGGTGGTGGCGGTGCTGCGGCGGGTCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(58-121)

Peptidase S24-like (Peptidase_S24)

(147-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80

0.37