Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OG230_RS25765 Genome accession   NZ_CP108101
Coordinates   5831624..5832829 (+) Length   401 a.a.
NCBI ID   WP_328906088.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00234     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5826624..5837829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG230_RS25755 (OG230_25755) - 5828976..5830394 (+) 1419 WP_328906086.1 sugar porter family MFS transporter -
  OG230_RS25760 (OG230_25760) - 5830435..5831418 (-) 984 WP_328906087.1 LLM class flavin-dependent oxidoreductase -
  OG230_RS25765 (OG230_25765) pilA 5831624..5832829 (+) 1206 WP_328906088.1 signal recognition particle-docking protein FtsY Machinery gene
  OG230_RS25770 (OG230_25770) - 5832911..5833558 (-) 648 WP_328906089.1 bifunctional DNA primase/polymerase -
  OG230_RS25775 (OG230_25775) - 5833984..5835459 (+) 1476 WP_328906090.1 hypothetical protein -
  OG230_RS25780 (OG230_25780) - 5835803..5837155 (+) 1353 WP_328906091.1 ammonium transporter -
  OG230_RS25785 (OG230_25785) - 5837152..5837490 (+) 339 WP_328906092.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 401 a.a.        Molecular weight: 41989.96 Da        Isoelectric Point: 4.4583

>NTDB_id=653707 OG230_RS25765 WP_328906088.1 5831624..5832829(+) (pilA) [Streptomyces sp. NBC_00234]
MEIVILAVVIALVAVGLISGLVVSSRKKKQLPTPPPSSTPTITPPAEPHVGEEAEAPRDEARRTIEEAGLPDTAGEAPAT
AEPEAPAAPAIEIPEPTAGRLVRLRARLARSQNSLGKGLLTLLSRDNLDEDTWEEIEDTLLTADVGVAPTQELVERLRER
VRVLGTRTPDELRTLLREELVALLGPELDREVRTEGGADTPGVVMVVGVNGTGKTTTTGKLARVLVADGRSVVLGAADTF
RAAAADQLQTWGERVGARTVRGPEGGDPASIAFDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHGPLDE
ILLVLDATTGQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLIGLGEGPDDLAPFEPGAFVDALIG
D

Nucleotide


Download         Length: 1206 bp        

>NTDB_id=653707 OG230_RS25765 WP_328906088.1 5831624..5832829(+) (pilA) [Streptomyces sp. NBC_00234]
ATGGAAATCGTCATCCTTGCTGTAGTCATCGCCCTGGTCGCGGTCGGCCTGATCAGCGGGCTCGTGGTCAGCAGCCGCAA
GAAGAAGCAGCTGCCGACCCCGCCGCCGTCGAGCACGCCGACCATCACTCCTCCCGCCGAACCCCATGTCGGCGAGGAAG
CCGAGGCGCCGCGCGACGAAGCGCGGCGCACCATCGAGGAGGCCGGTCTCCCGGACACCGCGGGGGAAGCCCCGGCCACC
GCCGAACCGGAGGCGCCCGCCGCCCCCGCGATCGAAATCCCCGAGCCCACCGCGGGCCGTCTCGTACGGCTGCGCGCCCG
GCTCGCCCGCTCCCAGAACTCCCTGGGCAAGGGCCTGCTCACCCTGCTGTCCCGGGACAACCTCGACGAGGACACGTGGG
AGGAGATCGAGGACACCCTCCTCACCGCCGACGTCGGCGTCGCTCCCACCCAGGAACTCGTGGAGCGGCTCCGTGAACGG
GTCCGCGTCCTCGGCACCCGTACCCCCGACGAGCTGCGCACGCTGCTGCGCGAGGAGCTCGTCGCTCTCCTCGGTCCCGA
ACTCGACCGCGAGGTCAGGACGGAGGGCGGGGCCGACACCCCCGGCGTCGTGATGGTCGTCGGTGTCAACGGCACCGGCA
AGACCACCACCACCGGCAAGCTGGCCCGGGTGCTCGTCGCCGACGGCCGCAGCGTCGTGCTCGGCGCGGCCGACACCTTC
CGTGCCGCCGCCGCGGATCAGCTGCAGACCTGGGGCGAGCGCGTCGGCGCCCGCACCGTCCGCGGGCCCGAGGGCGGCGA
CCCCGCGTCGATCGCCTTCGACGCGGTGAAGGAAGGTATCGCCGAGGGCGCCGATGTCGTGCTCATCGACACCGCGGGCC
GTCTGCACACCAAGACCGGTCTGATGGACGAGCTCGGCAAGGTCAAGCGGGTCGTCGAGAAGCACGGGCCGCTCGACGAG
ATCCTGCTCGTCCTGGACGCGACCACCGGTCAGAACGGTCTGGTGCAGGCCCGCGTCTTCGCCGAGGTCGTCGACATCAC
CGGCATCGTCCTGACCAAGCTGGACGGGACCGCCAAGGGCGGCATCGTGATCGCCGTCCAGCGCGAGCTGGGCGTACCGG
TGAAGCTCATCGGACTCGGCGAGGGTCCCGACGACCTCGCCCCGTTCGAGCCCGGTGCGTTCGTGGACGCGCTGATCGGC
GACTGA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(202-399)

SRP54-type protein, helical bundle domain (SRP54_N)

(115-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

43.089

92.02

0.397