Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG230_RS11920 Genome accession   NZ_CP108101
Coordinates   2731633..2732316 (-) Length   227 a.a.
NCBI ID   WP_328910152.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00234     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2726633..2737316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG230_RS11910 (OG230_11910) - 2729118..2730098 (+) 981 WP_328910150.1 hypothetical protein -
  OG230_RS11915 (OG230_11915) clpX 2730179..2731477 (-) 1299 WP_328910151.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG230_RS11920 (OG230_11920) clpP 2731633..2732316 (-) 684 WP_328910152.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG230_RS11925 (OG230_11925) - 2732392..2732997 (-) 606 WP_328911377.1 ATP-dependent Clp protease proteolytic subunit -
  OG230_RS11930 (OG230_11930) tig 2733259..2734647 (-) 1389 WP_328910153.1 trigger factor -
  OG230_RS11945 (OG230_11945) - 2735192..2735386 (-) 195 WP_173313276.1 hypothetical protein -
  OG230_RS11950 (OG230_11950) - 2735877..2737031 (+) 1155 WP_328910154.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24808.18 Da        Isoelectric Point: 4.6867

>NTDB_id=653675 OG230_RS11920 WP_328910152.1 2731633..2732316(-) (clpP) [Streptomyces sp. NBC_00234]
MVNTHMNNFPGASASGLYTGPQVDNRYVVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMD
PDRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPHARVLIHQPSSQTGREQLS
DLEIAANEILRMRTQLEEMLAKHSTTPLEKISEDIERDKILTAEDALAYGLVDQIVSTRKTTAGASV

Nucleotide


Download         Length: 684 bp        

>NTDB_id=653675 OG230_RS11920 WP_328910152.1 2731633..2732316(-) (clpP) [Streptomyces sp. NBC_00234]
ATGGTGAACACCCACATGAACAACTTCCCCGGCGCCTCCGCGAGCGGCCTCTACACCGGCCCGCAGGTGGACAACCGCTA
CGTCGTCCCGCGCTTCGTGGAGCGCACCTCGCAGGGTGTGCGTGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCG
TGATCTTCCTCGGCGTCCAGATCGACGACGCCTCGGCCAACGACGTCATGGCGCAGCTCCTGTGCCTGGAGTCGATGGAC
CCGGACCGCGACATCTCGATCTACATCAACAGCCCCGGCGGCTCGTTCACCGCGCTCACCGCGATCTACGACACGATGCA
GTTCGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCCGTCCTGCTGGCGGCGGGCACGC
CGGGCAAGCGCATGGCGCTCCCGCACGCCCGTGTGCTGATCCACCAGCCGTCCTCGCAGACCGGCCGTGAGCAGCTCTCC
GACCTGGAGATCGCGGCCAACGAGATCCTCCGGATGCGCACCCAGCTCGAAGAGATGCTGGCCAAGCACTCCACCACCCC
GCTGGAGAAGATCAGCGAGGACATCGAGCGCGACAAGATCCTTACCGCGGAGGACGCCCTCGCGTACGGTCTGGTGGACC
AGATCGTCTCCACCCGTAAGACCACGGCCGGCGCTTCCGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

50.526

83.7

0.423
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.872

82.819

0.396
  clpP Lactococcus lactis subsp. cremoris KW2

44.503

84.141

0.374
  clpP Streptococcus pyogenes JRS4

43.814

85.463

0.374
  clpP Streptococcus thermophilus LMG 18311

43.814

85.463

0.374
  clpP Streptococcus thermophilus LMD-9

43.814

85.463

0.374
  clpP Streptococcus pyogenes MGAS315

43.814

85.463

0.374
  clpP Streptococcus mutans UA159

44.211

83.7

0.37
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.979

84.141

0.37
  clpP Streptococcus pneumoniae Rx1

43.523

85.022

0.37
  clpP Streptococcus pneumoniae D39

43.523

85.022

0.37
  clpP Streptococcus pneumoniae R6

43.523

85.022

0.37
  clpP Streptococcus pneumoniae TIGR4

43.523

85.022

0.37