Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   L6465_RS08205 Genome accession   NZ_CP091788
Coordinates   2090812..2092203 (+) Length   463 a.a.
NCBI ID   WP_237823663.1    Uniprot ID   -
Organism   Prevotella sp. E2-28     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2085812..2097203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6465_RS08190 (L6465_08190) - 2086255..2087547 (+) 1293 WP_237823656.1 phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase family protein -
  L6465_RS08195 (L6465_08195) - 2087544..2089739 (-) 2196 WP_237823658.1 tetratricopeptide repeat protein -
  L6465_RS08200 (L6465_08200) - 2089756..2090676 (-) 921 WP_237823661.1 ABC transporter substrate-binding protein -
  L6465_RS08205 (L6465_08205) radA 2090812..2092203 (+) 1392 WP_237823663.1 DNA repair protein RadA Machinery gene
  L6465_RS08210 (L6465_08210) - 2092226..2094676 (-) 2451 WP_237823665.1 AraC family transcriptional regulator -
  L6465_RS08220 (L6465_08220) - 2094939..2096126 (-) 1188 WP_237823668.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 50671.34 Da        Isoelectric Point: 6.7686

>NTDB_id=653659 L6465_RS08205 WP_237823663.1 2090812..2092203(+) (radA) [Prevotella sp. E2-28]
MAKDKTAYVCENCGQESAKWIGKCPSCGQWNTFKEIKISDDSVRQTATSAAAKAGHVLRTNRAMKLSEISSHDEKRIDMG
DGELNRVLGGGLVPGSIVLLGGEPGIGKSTLSLQTMLGLTDKRILYVSGEESAHQLKMRAERILNGRPCPEDFMILCENA
LEHIFEHIKEEKPDMVVVDSIQTIATEDVESSAGSVAQVRECASALLRFAKTSGVPVILIGHITKEGTLAGPKILEHIVD
TVIQFEGDQHYMYRILRSIKNRFGSTSELGIYEMLQNGLRQVSNPSELLLTQDHEGLSGIAISSAIEGVRPFLLETQALV
SSAAYGTPQRSATGFDQRRLNMLLAVLEKRVGFKLMQKDVFVNIAGGLRVTDLAMDLSVIAAVLSSNVDTPIEAGWCMAG
EVGLSGEVRPINRIDQRIAEAEKLGFQHIIIPRHNMQGLNTKKYKIEIHPVRKVEEALRALFG

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=653659 L6465_RS08205 WP_237823663.1 2090812..2092203(+) (radA) [Prevotella sp. E2-28]
ATGGCAAAGGACAAGACAGCATACGTTTGCGAAAACTGTGGACAAGAATCTGCAAAATGGATTGGAAAATGTCCATCATG
CGGCCAATGGAACACGTTTAAGGAAATCAAGATAAGCGATGACAGCGTACGACAGACGGCCACATCGGCAGCTGCGAAGG
CGGGTCATGTATTACGTACCAACCGTGCAATGAAGCTCAGCGAGATTAGTAGTCACGATGAGAAACGCATTGACATGGGC
GACGGCGAGCTAAACCGCGTCCTTGGCGGAGGCCTTGTTCCTGGCAGTATCGTTCTTTTAGGCGGAGAGCCTGGTATTGG
AAAATCGACCTTGTCACTTCAAACCATGCTCGGCTTAACAGACAAGCGCATCCTTTATGTCAGCGGTGAGGAAAGCGCCC
ATCAGCTGAAGATGCGTGCAGAGCGTATCTTGAATGGTCGTCCTTGTCCTGAGGACTTCATGATTCTGTGCGAGAATGCG
CTGGAGCATATCTTTGAGCATATCAAAGAAGAGAAGCCCGATATGGTCGTGGTTGACTCTATCCAGACTATTGCGACGGA
AGATGTAGAATCGAGTGCCGGCTCTGTGGCTCAGGTTCGTGAGTGTGCTTCAGCCCTACTGCGATTTGCCAAGACAAGTG
GCGTACCTGTGATTCTGATTGGTCACATCACTAAAGAAGGCACGCTGGCTGGTCCGAAGATTCTTGAGCATATCGTGGAT
ACCGTCATTCAGTTTGAAGGCGACCAGCATTATATGTATCGTATTCTGAGAAGCATCAAGAACCGCTTTGGAAGTACGTC
TGAGCTAGGTATTTACGAGATGCTGCAGAACGGACTCCGACAGGTGAGCAACCCTTCGGAACTGCTTCTGACACAAGACC
ACGAAGGCCTTTCAGGTATTGCCATTTCAAGTGCCATAGAAGGTGTACGCCCATTCCTTTTGGAGACGCAGGCTCTTGTC
TCTTCAGCAGCTTATGGCACTCCTCAACGTTCTGCAACAGGATTCGACCAGCGAAGACTGAACATGCTGCTGGCTGTACT
GGAAAAGCGCGTAGGCTTCAAACTGATGCAGAAGGATGTGTTTGTGAATATTGCAGGCGGACTGAGGGTTACTGACTTGG
CCATGGACCTCTCTGTCATCGCGGCTGTTCTGTCTTCAAATGTTGATACCCCTATTGAAGCTGGCTGGTGTATGGCTGGC
GAAGTTGGCCTGAGTGGTGAGGTTCGTCCTATCAATCGTATTGACCAGCGTATAGCCGAGGCCGAGAAGTTGGGATTCCA
GCATATCATCATACCTCGCCATAATATGCAAGGTCTCAACACGAAGAAATACAAAATTGAGATTCATCCTGTCAGAAAGG
TAGAAGAGGCGCTACGTGCCCTCTTTGGCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(349-435)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(83-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

47.957

100

0.482
  radA Streptococcus mitis NCTC 12261

43.844

100

0.438
  radA Streptococcus pneumoniae Rx1

43.844

100

0.438
  radA Streptococcus pneumoniae D39

43.844

100

0.438
  radA Streptococcus pneumoniae R6

43.844

100

0.438
  radA Streptococcus pneumoniae TIGR4

43.844

100

0.438
  radA Streptococcus mitis SK321

43.844

100

0.438