Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG230_RS04740 Genome accession   NZ_CP108101
Coordinates   1132662..1133312 (+) Length   216 a.a.
NCBI ID   WP_328908863.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00234     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1127662..1138312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG230_RS04720 (OG230_04715) mug 1128867..1129430 (+) 564 WP_328908859.1 G/U mismatch-specific DNA glycosylase -
  OG230_RS04725 (OG230_04720) - 1129698..1130441 (-) 744 WP_328908860.1 ABC transporter permease -
  OG230_RS04730 (OG230_04725) - 1130438..1131376 (-) 939 WP_328908861.1 ATP-binding cassette domain-containing protein -
  OG230_RS04735 (OG230_04730) - 1131485..1132657 (+) 1173 WP_328908862.1 histidine kinase -
  OG230_RS04740 (OG230_04735) vraR 1132662..1133312 (+) 651 WP_328908863.1 response regulator transcription factor Regulator
  OG230_RS04745 (OG230_04740) - 1133413..1134570 (+) 1158 WP_328908864.1 ROK family transcriptional regulator -
  OG230_RS04750 (OG230_04745) - 1134629..1135393 (-) 765 WP_328908865.1 GntR family transcriptional regulator -
  OG230_RS04755 (OG230_04750) - 1135669..1136553 (-) 885 WP_328908866.1 RNA polymerase sigma-70 factor -
  OG230_RS04760 (OG230_04755) - 1136675..1137505 (+) 831 WP_328908867.1 alpha/beta fold hydrolase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23121.87 Da        Isoelectric Point: 4.9717

>NTDB_id=653659 OG230_RS04740 WP_328908863.1 1132662..1133312(+) (vraR) [Streptomyces sp. NBC_00234]
MPVTVLLVDDEPLVRAGLRAVLDAQPDIEVVGEAGDGAAVIPLVRQLRPDVVAMDVRMPLMDGIEATKVLLRTVPQPPKI
LVVTTFENDEYIYEALRAGADGFLLKRARPTEIVNAVRLVAEGESLLFPAAVRQLAAEYGTSKARAAMERASLTEREEAV
LRLMARGLSNSEIAAKLVVGVETVKSHVSAVLAKLGARDRTQAVIAAYESGFVAPS

Nucleotide


Download         Length: 651 bp        

>NTDB_id=653659 OG230_RS04740 WP_328908863.1 1132662..1133312(+) (vraR) [Streptomyces sp. NBC_00234]
ATGCCGGTTACCGTTCTTCTGGTCGACGACGAACCCCTCGTACGTGCGGGACTGCGTGCGGTCCTCGACGCACAGCCCGA
CATCGAGGTGGTGGGCGAGGCGGGCGACGGCGCCGCGGTGATTCCGCTGGTGCGGCAGCTGCGGCCCGATGTGGTCGCGA
TGGATGTGCGTATGCCGCTGATGGACGGCATCGAGGCGACCAAGGTCCTGCTGAGGACGGTGCCGCAGCCGCCGAAGATC
CTGGTGGTGACGACGTTCGAGAACGACGAGTACATCTACGAGGCACTGCGGGCGGGAGCTGACGGATTTCTGCTCAAGCG
CGCCCGGCCCACGGAGATCGTCAACGCGGTGCGGCTGGTGGCGGAGGGGGAGTCGCTCCTGTTCCCGGCCGCGGTCCGCC
AGCTCGCCGCCGAGTACGGCACGAGCAAGGCCCGGGCGGCCATGGAGCGGGCTTCGCTCACCGAGCGCGAGGAGGCGGTG
CTCCGGTTGATGGCCAGGGGCCTGTCCAACTCGGAGATCGCCGCCAAGCTCGTCGTCGGTGTCGAGACGGTGAAGTCGCA
TGTCAGTGCCGTCCTGGCCAAGTTGGGGGCGAGGGATCGCACCCAGGCGGTGATCGCCGCGTACGAGTCCGGCTTCGTGG
CTCCAAGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-118)

Bacterial regulatory proteins, luxR family (GerE)

(152-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.784

98.611

0.412
  degU Bacillus subtilis subsp. subtilis str. 168

37.5

100

0.389