Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG446_RS35115 Genome accession   NZ_CP108100
Coordinates   7875159..7876181 (-) Length   340 a.a.
NCBI ID   WP_328897825.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00236     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 7870159..7881181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG446_RS35090 (OG446_35095) - 7870463..7870825 (-) 363 WP_328897820.1 peptidoglycan-binding domain-containing protein -
  OG446_RS35095 (OG446_35100) - 7871281..7871811 (+) 531 WP_328897821.1 helix-turn-helix transcriptional regulator -
  OG446_RS35100 (OG446_35105) - 7871704..7872561 (-) 858 WP_328897822.1 SDR family oxidoreductase -
  OG446_RS35105 (OG446_35110) - 7872695..7873624 (+) 930 WP_328897823.1 LysR family transcriptional regulator -
  OG446_RS35110 (OG446_35115) - 7873730..7874821 (-) 1092 WP_328897824.1 lytic polysaccharide monooxygenase -
  OG446_RS35115 (OG446_35120) cytR 7875159..7876181 (-) 1023 WP_328897825.1 LacI family DNA-binding transcriptional regulator Regulator
  OG446_RS35120 (OG446_35125) - 7876687..7878072 (+) 1386 WP_328897826.1 cellulase family glycosylhydrolase -
  OG446_RS35125 (OG446_35130) - 7878139..7879005 (+) 867 WP_328897827.1 helix-turn-helix domain-containing protein -
  OG446_RS35130 (OG446_35135) - 7879034..7879894 (-) 861 WP_328897828.1 methyltransferase domain-containing protein -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 36997.18 Da        Isoelectric Point: 6.8885

>NTDB_id=653651 OG446_RS35115 WP_328897825.1 7875159..7876181(-) (cytR) [Streptomyces sp. NBC_00236]
MLKRSSGTPTLEEVAALAGVGRGTVSRVINNASGVKASTRRAVQRAIEELDYVPNLAARSLAGRRADAVALVMTKTDWRL
FGEPFFSEVARAVGDALTEADVQLLLTLVRTDAERQRLVKYVRGGRIDGALLMSVRAEDRLPDMLADAGLPTVLLGRRSD
EERVTYVDADNVGGARAAVAHLARGGRKSIAAITGPPEMYASRCRLRGYREALRDAGIDEVQSLVVQGDFSEVSGRRAMT
GLIERHPEVDGVFASSDSMAAGAVTALHTAGRRVPQDVAVIGFDDFELAEQTEPRLTTVRQPMEEIGRTMVRLLLEEMDQ
PQVAWRHVILRTQLVVRESA

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=653651 OG446_RS35115 WP_328897825.1 7875159..7876181(-) (cytR) [Streptomyces sp. NBC_00236]
ATGCTGAAGCGAAGTTCCGGCACACCGACGCTGGAGGAAGTGGCCGCGCTCGCCGGAGTGGGGCGGGGCACGGTCTCCCG
GGTGATCAACAACGCGTCGGGCGTCAAGGCGTCCACACGCCGTGCCGTGCAGCGCGCCATCGAGGAACTGGACTACGTCC
CCAACCTGGCCGCGCGCTCACTGGCCGGCCGGCGCGCGGACGCCGTCGCACTGGTGATGACGAAGACGGACTGGCGGCTG
TTCGGGGAGCCGTTCTTCTCAGAGGTCGCACGGGCGGTCGGGGACGCCCTGACCGAGGCGGACGTGCAGTTGCTGCTCAC
GCTCGTCCGCACGGACGCCGAGCGGCAGCGGCTCGTGAAGTACGTGCGCGGTGGCCGGATCGACGGGGCGCTGCTCATGT
CCGTGCGGGCCGAGGACCGGTTGCCGGACATGCTCGCCGACGCCGGACTGCCCACGGTGCTGCTCGGCAGGCGCTCGGAC
GAGGAACGGGTGACCTATGTGGACGCGGACAACGTGGGTGGCGCGCGGGCCGCGGTCGCCCATCTGGCGCGCGGCGGGCG
GAAGTCCATCGCCGCGATCACGGGCCCGCCCGAGATGTACGCCTCCCGGTGCAGGCTGCGCGGCTACCGGGAGGCGCTGC
GCGACGCCGGGATCGACGAGGTGCAGTCCCTGGTCGTACAGGGGGACTTCAGCGAGGTCAGCGGGCGGCGGGCGATGACC
GGGCTCATCGAACGGCACCCGGAGGTGGACGGCGTCTTCGCCTCGTCGGACAGCATGGCCGCCGGGGCGGTGACCGCCCT
GCACACGGCGGGACGCCGGGTCCCGCAGGATGTGGCGGTGATCGGCTTCGACGACTTCGAGCTGGCCGAGCAGACCGAAC
CGCGGCTGACGACCGTCCGCCAGCCGATGGAGGAGATCGGCCGGACCATGGTGCGGCTGCTGCTGGAGGAGATGGACCAG
CCACAGGTCGCGTGGCGCCATGTGATCCTGCGGACGCAGCTGGTGGTGCGCGAGTCGGCCTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(179-339)

Bacterial regulatory proteins, lacI family (LacI)

(10-55)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.838

100

0.365