Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG446_RS30890 Genome accession   NZ_CP108100
Coordinates   6925281..6925967 (-) Length   228 a.a.
NCBI ID   WP_328897082.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00236     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6920281..6930967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG446_RS30865 (OG446_30880) ureG 6920629..6921279 (+) 651 WP_328898468.1 urease accessory protein UreG -
  OG446_RS30870 (OG446_30885) - 6921276..6921992 (+) 717 WP_328897079.1 urease accessory protein UreD -
  OG446_RS30875 (OG446_30890) - 6922083..6922826 (+) 744 WP_328897080.1 SDR family oxidoreductase -
  OG446_RS30880 (OG446_30895) - 6922813..6924033 (-) 1221 WP_328898469.1 MFS transporter -
  OG446_RS30885 (OG446_30900) - 6924244..6925284 (-) 1041 WP_328897081.1 hypothetical protein -
  OG446_RS30890 (OG446_30905) vraR 6925281..6925967 (-) 687 WP_328897082.1 response regulator transcription factor Regulator
  OG446_RS30895 (OG446_30910) - 6925964..6928300 (-) 2337 WP_328897083.1 histidine kinase -
  OG446_RS30900 (OG446_30915) - 6928533..6928982 (+) 450 WP_328897084.1 DUF5707 domain-containing protein -
  OG446_RS30905 (OG446_30920) - 6929127..6929687 (+) 561 WP_328897085.1 dihydrofolate reductase family protein -
  OG446_RS30910 (OG446_30925) - 6929986..6930327 (+) 342 WP_328897086.1 metalloregulator ArsR/SmtB family transcription factor -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 23740.18 Da        Isoelectric Point: 4.6137

>NTDB_id=653642 OG446_RS30890 WP_328897082.1 6925281..6925967(-) (vraR) [Streptomyces sp. NBC_00236]
MSLSVLVVDDQGIVRAGFAAVVDGEEDMTVVGEAADGAEAVRLAEELAPDVVLMDVRMPELDGIAATRIITGRPDAPRVL
VLTTFDLDAYVFDALRAGASGFLLKDVRPGELLDGIRVVAAGESVLAPSATHRLIGHYASAPGAGIPGAPAPRELNGLTG
REQGVLTLIAAGLTNTEIAEHLDITVGTVKSHVNAVLRKLGLRDRVQATILAYDLGLARPDRSRGVPS

Nucleotide


Download         Length: 687 bp        

>NTDB_id=653642 OG446_RS30890 WP_328897082.1 6925281..6925967(-) (vraR) [Streptomyces sp. NBC_00236]
ATGAGCCTCAGCGTGCTGGTCGTCGACGACCAGGGCATCGTACGGGCGGGATTCGCCGCCGTGGTCGACGGCGAGGAGGA
CATGACAGTGGTCGGCGAGGCCGCCGACGGAGCGGAGGCGGTGCGGCTTGCCGAGGAGTTGGCACCCGACGTGGTCCTCA
TGGACGTCCGTATGCCGGAACTCGACGGCATCGCCGCCACCCGCATCATCACCGGCCGCCCCGACGCCCCTCGCGTCCTG
GTGCTGACCACCTTCGACCTCGACGCGTACGTGTTCGACGCCCTGCGCGCCGGGGCGTCCGGCTTCCTCCTCAAGGACGT
GCGTCCCGGCGAACTGCTGGACGGCATCAGGGTGGTGGCCGCCGGCGAGAGCGTCCTCGCCCCGTCCGCCACCCATCGGC
TCATCGGCCACTACGCGTCCGCACCGGGCGCCGGCATCCCGGGCGCCCCGGCCCCCCGCGAGCTGAACGGCCTGACCGGC
CGTGAGCAGGGGGTCCTGACCCTGATCGCGGCCGGGCTCACCAACACGGAGATCGCCGAGCACCTCGACATCACCGTCGG
CACCGTGAAATCACATGTCAACGCGGTACTCCGCAAGCTCGGACTGCGCGACCGGGTCCAGGCGACGATCCTCGCCTACG
ATCTCGGGCTCGCCCGGCCGGACCGGTCCCGGGGAGTTCCGTCATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-115)

Bacterial regulatory proteins, luxR family (GerE)

(158-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.462

96.93

0.373