Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG446_RS28870 Genome accession   NZ_CP108100
Coordinates   6448747..6449541 (-) Length   264 a.a.
NCBI ID   WP_219573501.1    Uniprot ID   A0ABY9IM67
Organism   Streptomyces sp. NBC_00236     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6443747..6454541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG446_RS28855 (OG446_28875) - 6443967..6444674 (+) 708 WP_328896744.1 GNAT family N-acetyltransferase -
  OG446_RS28860 (OG446_28880) - 6444735..6446642 (+) 1908 WP_328896745.1 IucA/IucC family siderophore biosynthesis protein -
  OG446_RS28865 (OG446_28885) - 6446693..6448663 (+) 1971 WP_328896746.1 ATP-dependent DNA helicase -
  OG446_RS28870 (OG446_28890) dinR/lexA 6448747..6449541 (-) 795 WP_219573501.1 transcriptional repressor LexA Regulator
  OG446_RS28875 (OG446_28895) nrdR 6450119..6450631 (+) 513 WP_148021323.1 transcriptional regulator NrdR -
  OG446_RS28880 (OG446_28900) - 6450792..6453698 (+) 2907 WP_328896747.1 vitamin B12-dependent ribonucleotide reductase -
  OG446_RS28885 (OG446_28905) - 6453804..6454340 (-) 537 WP_328896748.1 TerD family protein -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28622.39 Da        Isoelectric Point: 6.9854

>NTDB_id=653636 OG446_RS28870 WP_219573501.1 6448747..6449541(-) (dinR/lexA) [Streptomyces sp. NBC_00236]
MTTTADSAIITAQDRSQSRLEPVHAMNDSVTNTEGPEPARPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHN
SAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=653636 OG446_RS28870 WP_219573501.1 6448747..6449541(-) (dinR/lexA) [Streptomyces sp. NBC_00236]
GTGACCACCACCGCAGACAGTGCCATCATCACTGCCCAGGACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCCATGAA
TGACTCAGTCACGAACACGGAGGGGCCGGAGCCCGCGCGCCCAGCGCGCTCGCTGCCCGGACGACCTCCTGGAATCCGGG
CGGACAGCTCGGGGCTCACGGACCGGCAGCGGCGAGTGATCGAAGTCATCCGGGACTCCGTACAACGGCGGGGCTACCCC
CCGTCGATGCGGGAGATCGGTCAGGCGGTGGGCCTTTCCAGCACGTCCTCCGTCGCACATCAGCTGATGGCCCTGGAGCG
CAAGGGCTTCCTGCGCCGCGACCCCCATCGCCCCCGGGCGTACGAGGTGCGCGGCTCGGACCAGCCCAGCACACAGCCCA
CGGACACCACCGGGAAGCCCGCGGCGTCGTACGTGCCGTTGGTCGGCCGGATCGCGGCCGGTGGGCCGATCCTCGCCGAG
GAATCGGTGGAGGACGTGTTCCCCCTCCCCCGCCAGCTGGTCGGGGACGGAGAGCTCTTCGTACTGAAGGTCGTCGGTGA
CTCGATGATCGAAGCGGCGATCTGCGACGGGGACTGGGTCACCGTACGACGTCAGCCCGTGGCGGAGAACGGCGACATCG
TGGCCGCCATGCTGGACGGCGAGGCCACGGTCAAGCGCTTCAAGCGCGAGGACGGCCATGTGTGGCTGCTCCCGCACAAC
TCCGCGTACCAGCCGATTCCCGGCGACGAGGCGACGATCCTCGGCAAGGTCGTGGCGGTGCTGCGGCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80.303

0.371