Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OG446_RS27960 Genome accession   NZ_CP108100
Coordinates   6225622..6226818 (+) Length   398 a.a.
NCBI ID   WP_328896602.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00236     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6220622..6231818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG446_RS27945 (OG446_27965) - 6221503..6222921 (+) 1419 WP_328896599.1 sugar porter family MFS transporter -
  OG446_RS27950 (OG446_27970) - 6222994..6223959 (-) 966 WP_328896600.1 LLM class flavin-dependent oxidoreductase -
  OG446_RS27955 (OG446_27975) - 6224023..6225414 (-) 1392 WP_328896601.1 cytosine permease -
  OG446_RS27960 (OG446_27980) pilA 6225622..6226818 (+) 1197 WP_328896602.1 signal recognition particle-docking protein FtsY Machinery gene
  OG446_RS27965 (OG446_27985) - 6226907..6227566 (-) 660 WP_328896603.1 bifunctional DNA primase/polymerase -
  OG446_RS27970 (OG446_27990) - 6227990..6229465 (+) 1476 WP_328896604.1 hypothetical protein -
  OG446_RS27975 (OG446_27995) - 6229836..6231188 (+) 1353 WP_328898435.1 ammonium transporter -
  OG446_RS27980 (OG446_28000) - 6231185..6231523 (+) 339 WP_136330688.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 398 a.a.        Molecular weight: 41879.84 Da        Isoelectric Point: 4.5208

>NTDB_id=653631 OG446_RS27960 WP_328896602.1 6225622..6226818(+) (pilA) [Streptomyces sp. NBC_00236]
MEFVILAVVIALVAVGVISGLVVSSRKKKQLPPAPSSTPTITPPAEPHVGEEAETPRDTSRRTIEEVGLPPGEAPETAEP
ETPAAPALDVPEPTAGRLVRLRARLARSQNSLGKGLLTLLSRDNLDEDTWEEIEDTLLTADVGVAPTQELVERLRERVRV
LGTRTPEELRKLLREELLTLLGTDFDRAVKTDGGAETPGVVMVVGVNGTGKTTTTGKLARVLVADGRSVVLGAADTFRAA
AADQLQTWGERVGARTVRGPEGGDPASIAFDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHGPLDEILL
VLDATTGQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLVGLGEGPDDLAPFEPEAFVDALIGD

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=653631 OG446_RS27960 WP_328896602.1 6225622..6226818(+) (pilA) [Streptomyces sp. NBC_00236]
ATGGAATTCGTCATCCTTGCTGTAGTCATCGCCCTGGTCGCGGTCGGCGTGATCAGCGGGCTCGTGGTCAGCAGCCGCAA
GAAGAAGCAGCTGCCCCCGGCACCGTCGAGCACGCCGACCATCACTCCTCCCGCCGAGCCCCATGTCGGCGAGGAGGCCG
AGACGCCGCGCGACACCTCGCGCCGCACCATCGAGGAGGTCGGCCTTCCGCCCGGGGAGGCCCCCGAAACCGCAGAACCC
GAGACGCCCGCCGCCCCCGCGCTGGACGTCCCCGAGCCCACCGCCGGCCGGCTCGTACGGCTGCGGGCCAGGCTCGCCCG
CTCGCAGAACTCCCTCGGCAAGGGGCTGCTCACGCTCCTGTCCCGGGACAACCTCGACGAGGACACCTGGGAGGAGATCG
AGGACACCCTCCTCACCGCCGACGTCGGCGTCGCCCCCACCCAGGAACTGGTCGAACGGCTCCGCGAGCGCGTCCGCGTG
CTCGGCACCCGTACCCCCGAGGAACTGCGCAAGCTGCTGCGCGAGGAGCTCCTCACCCTGCTCGGCACCGACTTCGACCG
CGCGGTCAAGACGGACGGCGGCGCGGAGACCCCCGGCGTCGTCATGGTCGTCGGCGTCAACGGCACCGGCAAGACCACCA
CCACCGGCAAGCTGGCCCGGGTGCTCGTGGCCGACGGCCGCAGCGTCGTGCTCGGCGCGGCCGACACCTTCCGTGCCGCC
GCCGCGGACCAGCTCCAGACCTGGGGCGAGCGCGTCGGTGCCCGCACCGTGCGCGGACCCGAAGGCGGCGACCCGGCGTC
GATCGCCTTCGACGCCGTGAAGGAAGGCATCGCCGAGGGCGCCGACGTCGTGCTCATCGACACGGCGGGCCGGCTGCACA
CCAAGACCGGGCTGATGGACGAGCTCGGCAAGGTCAAGCGGGTCGTCGAGAAGCACGGACCGCTCGACGAGATCCTGCTC
GTCCTCGACGCCACCACCGGCCAGAACGGCCTGGTGCAGGCGCGGGTGTTCGCCGAGGTCGTCGACATCACCGGCATCGT
CCTCACCAAGCTCGACGGCACCGCCAAGGGCGGCATCGTCATCGCCGTCCAGCGCGAGCTGGGCGTACCGGTGAAGCTCG
TCGGGCTCGGCGAGGGGCCGGACGATCTGGCCCCGTTCGAGCCGGAGGCGTTCGTGGACGCCCTGATCGGGGACTGA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(199-396)

SRP54-type protein, helical bundle domain (SRP54_N)

(112-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

42.407

87.688

0.372