Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   L6W14_RS22265 Genome accession   NZ_CP091777
Coordinates   4415665..4417041 (-) Length   458 a.a.
NCBI ID   WP_004233577.1    Uniprot ID   A0A2X0Y605
Organism   Lysinibacillus sp. ACHW1.5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4410665..4422041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6W14_RS22245 (L6W14_22245) ispF 4411728..4412204 (-) 477 WP_131521810.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  L6W14_RS22250 (L6W14_22250) epsC 4412346..4413287 (-) 942 WP_131521809.1 serine O-acetyltransferase EpsC -
  L6W14_RS22255 (L6W14_22255) ispD 4413590..4414285 (-) 696 WP_131521808.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  L6W14_RS22260 (L6W14_22260) - 4414297..4415382 (-) 1086 WP_131521807.1 PIN/TRAM domain-containing protein -
  L6W14_RS22265 (L6W14_22265) radA 4415665..4417041 (-) 1377 WP_004233577.1 DNA repair protein RadA Machinery gene
  L6W14_RS22270 (L6W14_22270) - 4417133..4419577 (-) 2445 WP_016992144.1 ATP-dependent Clp protease ATP-binding subunit -
  L6W14_RS22275 (L6W14_22275) - 4419567..4420676 (-) 1110 WP_237898900.1 protein arginine kinase -
  L6W14_RS22280 (L6W14_22280) - 4420673..4421215 (-) 543 WP_004233574.1 UvrB/UvrC motif-containing protein -
  L6W14_RS22285 (L6W14_22285) - 4421229..4421699 (-) 471 WP_004233573.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50187.01 Da        Isoelectric Point: 7.3825

>NTDB_id=653596 L6W14_RS22265 WP_004233577.1 4415665..4417041(-) (radA) [Lysinibacillus sp. ACHW1.5]
MAKKKTKFVCSGCGYESAKWMGRCPGCGEWNKMVEEVEMVAKGPRGAFQHSATVTQKAIPIIQVEATEESRVATEMGELN
RVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSALLSNKGHRVLYISGEESIRQTKLRAERLGVISQELYIYSETNLEFLNQ
TIDEVQPKFVIVDSIQTVFHPEVTSAPGSVSQVRECTAELMRIAKTKGIAIFLVGHVTKEGQIAGPRILEHMVDTVLYFE
GERHHNHRILRSQKNRFGSTNEIAIFEMLQGGLKEVLNPSELFLQERSQGAAGSTIVASMEGTRPILVEIQSLVTPTSFN
YPKRMATGVDQNRVQLLMAVLEKRMGLMLQAQDAYIKVAGGVKLDEPAIDLAVLTSIVSSFKDQAVRATDCFIGEVGLTG
EVRRVSRIEQRVIEAAKLGFKRAFIPSSNIGGWEFPQGIEIVGVETIKDALNACFREL

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=653596 L6W14_RS22265 WP_004233577.1 4415665..4417041(-) (radA) [Lysinibacillus sp. ACHW1.5]
TTGGCAAAGAAAAAAACGAAATTTGTATGTTCAGGCTGTGGCTATGAATCTGCTAAATGGATGGGAAGATGCCCTGGGTG
TGGTGAATGGAATAAAATGGTGGAAGAAGTAGAAATGGTTGCTAAAGGTCCACGTGGAGCTTTTCAACATTCTGCTACAG
TTACTCAAAAGGCAATCCCGATTATCCAAGTGGAAGCTACTGAAGAATCGCGTGTAGCAACAGAAATGGGCGAACTCAAT
CGCGTATTAGGCGGTGGCATTGTACCTGGTTCTCTAGTATTAATTGGGGGCGATCCTGGAATAGGGAAATCAACATTACT
ATTACAGGTCTCCGCATTACTCTCGAATAAAGGGCATCGCGTACTTTATATATCTGGAGAGGAATCTATTCGTCAAACGA
AATTACGAGCAGAGCGTTTAGGAGTGATTTCTCAAGAGCTTTACATATACTCCGAAACAAACCTAGAGTTTTTAAACCAA
ACTATTGATGAAGTACAACCTAAATTTGTCATTGTCGATTCCATACAAACCGTCTTTCATCCAGAAGTAACAAGCGCCCC
AGGTAGTGTCTCACAGGTTCGTGAATGTACAGCTGAGCTGATGCGAATCGCTAAAACAAAAGGCATTGCTATTTTTCTAG
TAGGACATGTCACAAAAGAGGGACAAATTGCAGGGCCACGTATTTTAGAGCATATGGTGGATACTGTACTGTACTTTGAA
GGGGAGAGACACCATAATCATCGTATTTTAAGAAGCCAAAAAAACCGATTCGGATCTACAAATGAAATTGCTATATTTGA
AATGCTTCAAGGTGGGTTAAAGGAAGTGCTAAACCCTTCTGAGTTATTTTTACAGGAGCGGTCACAAGGTGCGGCGGGGT
CAACTATTGTAGCCTCAATGGAGGGGACAAGGCCAATTCTTGTTGAAATTCAATCCTTAGTTACGCCTACAAGCTTTAAC
TATCCTAAACGTATGGCCACAGGTGTCGATCAAAATCGAGTACAATTGCTAATGGCTGTACTAGAAAAGCGTATGGGTCT
CATGCTACAAGCTCAGGATGCATATATTAAAGTTGCTGGTGGTGTCAAGCTGGATGAGCCAGCAATAGATTTAGCGGTGT
TGACAAGCATTGTATCTAGTTTTAAGGATCAGGCAGTGCGTGCAACGGATTGCTTTATTGGTGAGGTCGGACTGACAGGT
GAGGTCCGTCGGGTATCACGTATAGAACAGCGAGTCATTGAAGCGGCGAAGCTTGGATTTAAAAGAGCTTTCATTCCTTC
TTCGAATATTGGTGGTTGGGAATTTCCGCAGGGAATTGAAATTGTTGGTGTAGAAACGATTAAAGATGCACTAAATGCAT
GCTTTAGAGAGTTATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(346-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(64-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X0Y605

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

70.705

99.127

0.701
  radA Streptococcus pneumoniae Rx1

62.281

99.563

0.62
  radA Streptococcus pneumoniae D39

62.281

99.563

0.62
  radA Streptococcus pneumoniae R6

62.281

99.563

0.62
  radA Streptococcus pneumoniae TIGR4

62.281

99.563

0.62
  radA Streptococcus mitis NCTC 12261

62.281

99.563

0.62
  radA Streptococcus mitis SK321

62.281

99.563

0.62