Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG446_RS10745 Genome accession   NZ_CP108100
Coordinates   2402857..2404788 (+) Length   643 a.a.
NCBI ID   WP_328893812.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00236     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2397857..2409788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG446_RS10730 (OG446_10745) - 2399144..2399443 (+) 300 WP_148021896.1 YtxH domain-containing protein -
  OG446_RS10735 (OG446_10750) - 2399511..2400956 (+) 1446 WP_328893810.1 FGGY family carbohydrate kinase -
  OG446_RS10740 (OG446_10755) rcrP 2401124..2402857 (+) 1734 WP_328893811.1 ABC transporter ATP-binding protein Regulator
  OG446_RS10745 (OG446_10760) rcrQ 2402857..2404788 (+) 1932 WP_328893812.1 ABC transporter ATP-binding protein Regulator
  OG446_RS10750 (OG446_10765) - 2404903..2406027 (-) 1125 WP_328893813.1 RNA polymerase sigma factor -
  OG446_RS10755 (OG446_10770) dnaG 2406224..2408131 (-) 1908 WP_328893814.1 DNA primase -

Sequence

Protein


Download         Length: 643 a.a.        Molecular weight: 69336.73 Da        Isoelectric Point: 4.9793

>NTDB_id=653588 OG446_RS10745 WP_328893812.1 2402857..2404788(+) (rcrQ) [Streptomyces sp. NBC_00236]
MAGPGGRMMAGGAPTDRSMDFKCSSKRLLKRFAAEKATLYVMMVAVALSVALSVVGPKILGKATDLVFAGVVGRGMDAGT
TKEQAVEGLRKSNSGLADMLSKVDFTPGQGMDFDAIGRVLLVALAVYVGAGLLMLVSTRLSIRVINRVVFQLREDIQTKL
SRLPLSYFDRAKRGEVLSRATNDIDNISQTMQQTMGQLINSLLTIIGVLVMMFWISPLLALVALVTVPLSVVVAAKVGKR
SQPQFVQQWKVTGKLNAHIEEMYTGHTLVKVFGRQDESARDFAEQNEALYEAGFKAQFNSGIMQPLMMFVSNLNYVLIAV
VGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGIASAERIFELLDAEEQDADPSKGEGEFPGELRGSVSL
ENVSFRYDPDKPLIEDLSLNVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTEGRIALDGVDIAKMSRDDLRSGIGMVLQD
TWLFGGTIAENIAYGASGDVTREQIEEAARAAHADRFIRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLD
EATSSVDTRTEVLIQKAMAGLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHDELLEAHGAYARLYAAQFAQAVA
EVD

Nucleotide


Download         Length: 1932 bp        

>NTDB_id=653588 OG446_RS10745 WP_328893812.1 2402857..2404788(+) (rcrQ) [Streptomyces sp. NBC_00236]
ATGGCCGGGCCTGGTGGACGCATGATGGCGGGCGGCGCTCCGACCGACCGGTCCATGGACTTCAAGTGCTCGTCGAAGCG
GCTGCTGAAGCGCTTCGCGGCGGAGAAGGCCACCCTGTACGTGATGATGGTGGCCGTCGCGCTGAGCGTGGCGCTGTCCG
TGGTCGGCCCGAAGATCCTCGGCAAGGCCACCGACCTGGTGTTCGCGGGTGTCGTCGGCCGGGGGATGGACGCGGGGACG
ACGAAGGAGCAGGCCGTCGAGGGCCTGCGCAAGAGCAACAGCGGTCTGGCCGACATGCTCTCCAAGGTGGACTTCACCCC
GGGGCAGGGCATGGACTTCGACGCGATCGGCCGGGTGCTGCTCGTGGCGCTGGCCGTGTACGTCGGCGCGGGGCTGCTGA
TGCTGGTGTCGACGCGGCTGTCGATCCGGGTGATCAACCGGGTCGTGTTCCAACTGCGTGAGGACATCCAGACGAAGCTG
TCGCGGCTGCCGCTGTCGTACTTCGACCGGGCCAAGCGCGGCGAGGTGCTGAGCCGGGCGACGAACGACATCGACAACAT
CTCGCAGACGATGCAGCAGACGATGGGGCAGCTGATCAACTCGCTGCTGACCATCATCGGCGTGCTCGTGATGATGTTCT
GGATCTCGCCGCTGCTGGCGCTGGTCGCGCTGGTGACGGTGCCGCTGTCGGTGGTCGTGGCGGCGAAGGTCGGCAAGCGC
TCGCAGCCGCAGTTCGTCCAGCAGTGGAAGGTGACGGGCAAGCTCAACGCCCACATCGAGGAGATGTACACCGGGCACAC
CCTGGTGAAGGTCTTCGGGCGGCAGGACGAGTCGGCGCGGGACTTCGCCGAGCAGAACGAGGCGCTGTACGAGGCCGGGT
TCAAGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTATGTGCTGATCGCCGTC
GTCGGCGGGCTGCGCGTCGCTTCGGGCGCGCTGTCGATCGGTGATGTGCAGGCCTTCATCCAGTACTCGCGGCAGTTCTC
CATGCCGCTGACCCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCCGGGATCGCCTCGGCGGAGCGGATCTTCGAGCTGC
TGGACGCCGAGGAGCAGGACGCCGACCCGTCGAAGGGCGAGGGCGAGTTCCCGGGCGAGCTGCGCGGCAGCGTGTCCCTG
GAAAACGTGTCGTTCCGCTACGACCCGGACAAGCCGCTCATCGAGGACCTCTCGCTGAACGTCGAGCCGGGTCACACGGT
CGCGATCGTCGGCCCGACCGGCGCCGGAAAGACGACGCTGGTCAATCTCCTGATGCGGTTCTACGAGGTGACCGAGGGCC
GGATCGCTCTCGACGGGGTCGACATCGCGAAGATGTCGCGCGACGACCTGCGTTCGGGCATCGGCATGGTCCTCCAGGAC
ACCTGGCTGTTCGGCGGGACCATCGCGGAGAACATCGCCTACGGGGCCTCGGGCGACGTCACCCGGGAGCAGATCGAGGA
GGCGGCACGGGCGGCCCACGCCGACCGCTTCATCCGCACCCTGCCCGACGGTTACGACACGGTGATCGACGACGAGGGCT
CCGGTGTCAGCGCCGGCGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATACTGGTGCTCGAC
GAGGCGACCAGCTCCGTCGACACCCGCACCGAGGTGCTGATCCAGAAGGCGATGGCCGGCCTCGCGCACGGTCGTACGAG
CTTCGTGATCGCGCACCGGCTCTCCACCATCCGGGACGCCGACGTCATCCTGGTGATGGAGAACGGGTCGATCGTCGAGC
AGGGCACGCACGACGAGCTGCTGGAGGCGCACGGCGCTTACGCCCGGCTGTACGCGGCGCAGTTCGCGCAGGCGGTCGCC
GAGGTCGACTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(57-350)

ABC transporter (ABC_tran)

(415-564)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.161

96.423

0.387