Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG446_RS10740 Genome accession   NZ_CP108100
Coordinates   2401124..2402857 (+) Length   577 a.a.
NCBI ID   WP_328893811.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00236     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2396124..2407857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG446_RS10705 (OG446_10720) - 2396872..2397426 (-) 555 WP_328893809.1 TIGR03086 family metal-binding protein -
  OG446_RS10710 (OG446_10725) - 2397655..2397874 (-) 220 Protein_2121 deaminase -
  OG446_RS10730 (OG446_10745) - 2399144..2399443 (+) 300 WP_148021896.1 YtxH domain-containing protein -
  OG446_RS10735 (OG446_10750) - 2399511..2400956 (+) 1446 WP_328893810.1 FGGY family carbohydrate kinase -
  OG446_RS10740 (OG446_10755) rcrP 2401124..2402857 (+) 1734 WP_328893811.1 ABC transporter ATP-binding protein Regulator
  OG446_RS10745 (OG446_10760) rcrQ 2402857..2404788 (+) 1932 WP_328893812.1 ABC transporter ATP-binding protein Regulator
  OG446_RS10750 (OG446_10765) - 2404903..2406027 (-) 1125 WP_328893813.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62742.75 Da        Isoelectric Point: 5.1435

>NTDB_id=653587 OG446_RS10740 WP_328893811.1 2401124..2402857(+) (rcrP) [Streptomyces sp. NBC_00236]
MLIKLLRAYLGPYKKPIALLVVFQLLQTCATLYLPTLNADIIDNGVVQGDTGYIVQYGGVMIVVSIAQVVCNIGAVYIGA
RTASALGRDVRASVFDRVQSFSARELGRFGAPSLITRTTNDVQQVQMLALMTFTLMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGIAVSLIVRKMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDDYEEERFRGANTELTDVALSTGRLMAL
MFPTVMTVVNVSSIAVVWFGAHRIDSGGMEIGALTAFLSYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETDSSVVP
PVNPVRELTVHGHLEVRGADFRYPGAEEPVLRSVDLVARAGETTAIIGSTGSGKSTLLGLVPRLFDVTDGQVLVDGTDVR
TLDPVLLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEIAQAKEFVEALEHGLDAPIAQGGTNVSGGQRQRL
SIARTLVQRPEIYLFDDSFSALDYATDAALRAALLRETRGATVVIVAQRVSTIRDADRILVLDEGRVVGSGSHHELMEGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=653587 OG446_RS10740 WP_328893811.1 2401124..2402857(+) (rcrP) [Streptomyces sp. NBC_00236]
GTGCTCATAAAACTCCTGCGGGCCTATCTCGGCCCGTACAAGAAACCGATCGCGCTGCTGGTCGTCTTCCAGCTGCTGCA
GACCTGCGCCACTCTCTATCTGCCCACCCTGAACGCGGACATCATCGACAACGGTGTCGTCCAGGGCGACACGGGCTACA
TCGTCCAGTACGGCGGCGTCATGATCGTCGTCAGCATCGCCCAGGTGGTCTGCAACATCGGGGCCGTCTACATCGGCGCC
CGCACCGCGTCCGCCCTGGGCCGCGACGTACGGGCCTCGGTCTTCGACCGGGTGCAGTCGTTCTCCGCGCGCGAGCTCGG
CCGGTTCGGCGCTCCCTCGCTGATCACCCGTACGACCAATGACGTGCAGCAGGTCCAGATGCTGGCCCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGTGTCGGCGGCATCATCATGGCGCTCGGCCAGGACGTCCCGCTGTCCGCGGTG
CTGCTCGCGGTGGTGCCCGTCCTCGGCATCGCGGTGAGCCTGATCGTACGGAAGATGCGTCCGCTGTTCCGGACGATGCA
GGAGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGCGCCTTCGTGCGCGACG
ACTACGAGGAGGAGCGCTTCCGGGGCGCCAACACCGAGCTCACCGACGTGGCACTGTCCACGGGCCGGCTGATGGCGCTG
ATGTTCCCGACCGTGATGACGGTCGTGAACGTGTCGTCGATCGCCGTCGTCTGGTTCGGTGCGCACCGGATCGACAGCGG
CGGGATGGAGATCGGCGCGCTGACCGCGTTCCTCTCCTATCTGATGCAGATCGTCATGTCGGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCCGAGCGCATCCAGGAGGTCCTGGAGACGGACTCCTCCGTGGTGCCG
CCGGTGAACCCGGTGCGGGAGCTCACGGTCCACGGGCATCTGGAGGTACGCGGTGCGGACTTCCGCTACCCCGGCGCCGA
GGAGCCGGTGCTGCGCTCGGTGGACCTGGTGGCGCGGGCCGGCGAGACGACCGCGATCATCGGGTCGACGGGCAGCGGGA
AGTCGACGCTGCTCGGTCTCGTACCGCGGCTGTTCGATGTGACGGACGGCCAGGTGCTGGTCGACGGGACGGACGTGCGG
ACGCTGGATCCGGTTCTGCTGGCGAAGACCGTGAGCCTGGTCCCGCAGAAGCCGTACCTGTTCTCCGGGACGGTCGCGAC
GAATCTGCGGTACGGGAATCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGATCGCGCAGGCCAAGGAGTTCG
TCGAGGCGCTGGAGCACGGGCTCGACGCACCGATCGCACAGGGCGGCACCAATGTCTCCGGCGGGCAGCGACAGCGGCTC
TCGATCGCCCGGACGCTGGTGCAGCGGCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCTCTGGACTACGCCACGGA
CGCGGCGCTGCGTGCGGCGCTGCTGCGGGAGACCCGGGGAGCGACGGTGGTGATCGTCGCGCAGCGGGTGTCCACCATCC
GCGACGCCGACCGGATCCTGGTGCTGGACGAGGGCCGCGTCGTCGGTTCCGGCAGCCACCACGAGCTGATGGAAGGCAAT
GAGACATACCGGGAGATCGTTCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

41.068

94.107

0.386