Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG446_RS10610 Genome accession   NZ_CP108100
Coordinates   2376945..2377937 (-) Length   330 a.a.
NCBI ID   WP_328893792.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00236     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2371945..2382937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG446_RS10590 (OG446_10605) - 2373160..2373957 (+) 798 WP_328893789.1 VOC family protein -
  OG446_RS10595 (OG446_10610) - 2374038..2374200 (-) 163 Protein_2098 MFS transporter -
  OG446_RS10600 (OG446_10615) - 2374462..2376054 (-) 1593 WP_328893790.1 MFS transporter -
  OG446_RS10605 (OG446_10620) - 2376226..2376696 (-) 471 WP_328893791.1 MarR family transcriptional regulator -
  OG446_RS10610 (OG446_10625) cytR 2376945..2377937 (-) 993 WP_328893792.1 LacI family DNA-binding transcriptional regulator Regulator
  OG446_RS10615 (OG446_10630) - 2378266..2379981 (+) 1716 WP_328893793.1 discoidin domain-containing protein -
  OG446_RS10620 (OG446_10635) - 2380157..2381527 (+) 1371 WP_328893794.1 DUF1996 domain-containing protein -
  OG446_RS10625 (OG446_10640) - 2382355..2382795 (-) 441 WP_328893795.1 phosphatase PAP2 family protein -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 35116.07 Da        Isoelectric Point: 6.6598

>NTDB_id=653586 OG446_RS10610 WP_328893792.1 2376945..2377937(-) (cytR) [Streptomyces sp. NBC_00236]
MKRPTLDVVAARAGVSKSSVSRVINGETTVAPQIRDVVMRAVNELGYVPNGAARNLVTRRTDTLAVVVSDPPQGVVSDDP
LFSAVVRAVSRELETAGKRLVLMLAESDRSRTRVVQYIAGGHVDGVLLVALHGTDPLPAALARQGLPVVSFNRTSAQDVP
YVALDNAGGAALAVRHLLERGRRRIATITGPLELYEARERLDGYRQALRDTGRRSIVALGDFTRASGAEAMRQLLEDDPD
LDAVFAANDLMAIGALRTLHQAGRRVPEDVAVIGFDDIEAASYTSPALTSVRSPMADQATAAVHLLLGLIDGGPTGPVIM
PNELVVREST

Nucleotide


Download         Length: 993 bp        

>NTDB_id=653586 OG446_RS10610 WP_328893792.1 2376945..2377937(-) (cytR) [Streptomyces sp. NBC_00236]
ATGAAACGCCCCACTCTCGATGTGGTGGCCGCCCGAGCGGGCGTGTCCAAATCGAGCGTCTCCCGGGTCATCAACGGCGA
GACGACGGTCGCCCCGCAGATCCGGGACGTCGTCATGCGCGCCGTGAACGAATTGGGCTACGTGCCCAACGGTGCGGCAC
GCAATCTCGTCACCCGCCGCACGGACACCCTCGCCGTGGTGGTGTCCGACCCGCCCCAAGGAGTCGTCTCCGACGACCCC
CTCTTCTCCGCCGTGGTCCGCGCCGTCAGCAGAGAGCTCGAGACGGCGGGCAAGCGGCTCGTGCTCATGCTCGCGGAATC
GGACCGGAGCCGGACCAGGGTCGTGCAGTACATCGCCGGCGGGCACGTGGACGGCGTGCTCCTGGTCGCCCTGCACGGTA
CGGATCCGCTGCCGGCCGCACTGGCCCGGCAGGGCCTGCCTGTCGTGTCCTTCAACCGCACCTCCGCACAGGACGTCCCG
TACGTCGCACTGGACAACGCCGGCGGAGCGGCGCTGGCCGTGCGTCATCTCCTGGAGCGCGGTCGGCGGCGGATCGCCAC
CATCACGGGGCCGCTCGAACTGTACGAAGCGCGTGAGCGCCTCGACGGCTACCGGCAGGCGCTGCGTGACACCGGCCGCC
GCTCCATCGTGGCACTGGGCGACTTCACCCGAGCCTCCGGCGCCGAAGCCATGCGGCAGCTCCTGGAGGACGATCCCGAC
CTCGATGCGGTGTTCGCGGCCAACGACCTGATGGCGATCGGAGCCCTGCGCACCCTCCACCAAGCGGGCCGGCGCGTCCC
CGAGGACGTGGCGGTCATCGGCTTCGACGACATAGAAGCCGCGTCCTACACCAGTCCCGCGCTCACCTCGGTGCGCAGCC
CGATGGCCGACCAGGCGACCGCCGCCGTCCATCTGCTCCTCGGCCTGATCGACGGCGGCCCCACGGGGCCGGTGATCATG
CCGAACGAACTCGTCGTGCGCGAGTCGACCTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(174-330)

Bacterial regulatory proteins, lacI family (LacI)

(5-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.503

100

0.364