Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   L6503_RS07335 Genome accession   NZ_CP091770
Coordinates   1537939..1538343 (+) Length   134 a.a.
NCBI ID   WP_212864560.1    Uniprot ID   -
Organism   Helicobacter pylori strain K115     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1532939..1543343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6503_RS07300 (L6503_07300) - 1533111..1534049 (-) 939 WP_237775649.1 tetraacyldisaccharide 4'-kinase -
  L6503_RS07305 (L6503_07305) - 1534046..1534828 (-) 783 WP_237775650.1 NAD+ synthase -
  L6503_RS07315 (L6503_07315) ilvC 1535077..1536069 (+) 993 WP_237775651.1 ketol-acid reductoisomerase -
  L6503_RS07320 (L6503_07320) minD 1536094..1536900 (+) 807 WP_237775652.1 septum site-determining protein MinD -
  L6503_RS07325 (L6503_07325) minE 1536897..1537130 (+) 234 WP_000051411.1 cell division topological specificity factor MinE -
  L6503_RS07330 (L6503_07330) dprA 1537142..1537942 (+) 801 WP_237775653.1 DNA-processing protein DprA Machinery gene
  L6503_RS07335 (L6503_07335) dprB 1537939..1538343 (+) 405 WP_212864560.1 Holliday junction resolvase RuvX Machinery gene
  L6503_RS07835 - 1538475..1538630 (+) 156 WP_330865375.1 sel1 repeat family protein -
  L6503_RS07340 (L6503_07340) - 1538634..1539051 (+) 418 Protein_1440 tetratricopeptide repeat protein -
  L6503_RS07345 (L6503_07345) - 1539241..1539579 (+) 339 WP_000699916.1 hypothetical protein -
  L6503_RS07350 (L6503_07350) - 1539563..1540123 (+) 561 WP_121292122.1 hypothetical protein -
  L6503_RS07355 (L6503_07355) - 1540134..1540316 (+) 183 WP_237775654.1 lysozyme -
  L6503_RS07360 (L6503_07360) - 1540357..1540791 (+) 435 WP_237775655.1 hypothetical protein -
  L6503_RS07905 - 1540844..1541068 (+) 225 WP_414017606.1 hypothetical protein -
  L6503_RS07370 (L6503_07370) - 1541112..1541491 (+) 380 Protein_1446 DUF1294 domain-containing protein -
  L6503_RS07375 (L6503_07375) - 1541491..1542276 (+) 786 WP_237775656.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15356.87 Da        Isoelectric Point: 8.7193

>NTDB_id=653540 L6503_RS07335 WP_212864560.1 1537939..1538343(+) (dprB) [Helicobacter pylori strain K115]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYTDTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=653540 L6503_RS07335 WP_212864560.1 1537939..1538343(+) (dprB) [Helicobacter pylori strain K115]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTATGCTTTTAAACGGCGTTATTTTACCTTTAGAAGC
GATTTTACGCCACAACAGAAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGAGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATACGGACACGAACGCACGCATTGAACATTTTATCAAACTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

95.489

99.254

0.948