Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   L6503_RS05905 Genome accession   NZ_CP091770
Coordinates   1238524..1239837 (+) Length   437 a.a.
NCBI ID   WP_237775496.1    Uniprot ID   -
Organism   Helicobacter pylori strain K115     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1233524..1244837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6503_RS05880 (L6503_05880) - 1233529..1233756 (+) 228 Protein_1146 restriction endonuclease subunit R -
  L6503_RS05885 (L6503_05885) crdR 1233844..1234485 (+) 642 WP_001169803.1 copper response regulator transcription factor CrdR -
  L6503_RS05890 (L6503_05890) crdS 1234451..1235653 (+) 1203 WP_237776115.1 copper-sensing histidine kinase CrdS -
  L6503_RS05895 (L6503_05895) - 1235656..1237056 (+) 1401 WP_237775494.1 NAD(P)H-hydrate dehydratase -
  L6503_RS05900 (L6503_05900) - 1237067..1238527 (+) 1461 WP_237775495.1 replicative DNA helicase -
  L6503_RS05905 (L6503_05905) comEC/comE3 1238524..1239837 (+) 1314 WP_237775496.1 ComEC/Rec2 family competence protein Machinery gene
  L6503_RS05910 (L6503_05910) mqnP 1239866..1240750 (+) 885 WP_075645930.1 menaquinone biosynthesis prenyltransferase MqnP -
  L6503_RS05915 (L6503_05915) - 1240743..1241237 (+) 495 WP_237775497.1 hypothetical protein -
  L6503_RS05920 (L6503_05920) - 1241250..1241753 (+) 504 WP_000953083.1 DUF6115 domain-containing protein -
  L6503_RS05925 (L6503_05925) - 1241750..1242553 (+) 804 WP_237775498.1 phosphatidylserine decarboxylase -
  L6503_RS05930 (L6503_05930) nadA 1242543..1243553 (+) 1011 WP_237775499.1 quinolinate synthase NadA -
  L6503_RS05935 (L6503_05935) nadC 1243553..1244374 (+) 822 WP_237775500.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50097.10 Da        Isoelectric Point: 9.8315

>NTDB_id=653536 L6503_RS05905 WP_237775496.1 1238524..1239837(+) (comEC/comE3) [Helicobacter pylori strain K115]
MKDKTFQGAFELLATPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHVRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSTSVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
ALVFLNMLIITHAFFPMFSPYQLFSIPLGLIFVVFFPLSLFLHAVGLGSLLDGILNMPLTIPTIFVFSPLWLLGAHLFLT
ILSVRFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=653536 L6503_RS05905 WP_237775496.1 1238524..1239837(+) (comEC/comE3) [Helicobacter pylori strain K115]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTGGCGCTTAATCTTTATTTAGAATATTTGAATTACCAAAAGCTTGATTTTTCAAAACCCACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
ATTTTTAGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCGTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATG
TGCGCCATTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGACAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTTCATTTAGGGATTTT
GAGCACGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTGAAGCACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAAGTCATAAGCTTAAGC
GCGCTGGTGTTTTTGAACATGCTCATCATTACGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTGTCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACGATTTTTGTTTTTTCGCCTTTATGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTTTAAGCGTGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.279

100

0.943