Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   L6503_RS01730 Genome accession   NZ_CP091770
Coordinates   380372..380656 (-) Length   94 a.a.
NCBI ID   WP_000736478.1    Uniprot ID   -
Organism   Helicobacter pylori strain K115     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 375372..385656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6503_RS01705 (L6503_01705) - 376182..376835 (+) 654 Protein_335 IS607 family transposase -
  L6503_RS01710 (L6503_01710) - 376810..378069 (+) 1260 WP_237775443.1 RNA-guided endonuclease InsQ/TnpB family protein -
  L6503_RS01715 (L6503_01715) - 378095..379851 (-) 1757 Protein_337 FtsK/SpoIIIE domain-containing protein -
  L6503_RS01720 (L6503_01720) - 379851..380087 (-) 237 WP_001183709.1 hypothetical protein -
  L6503_RS01725 (L6503_01725) comB3 380098..380361 (-) 264 WP_001177712.1 hypothetical protein Machinery gene
  L6503_RS01730 (L6503_01730) comB2 380372..380656 (-) 285 WP_000736478.1 TrbC/VirB2 family protein Machinery gene
  L6503_RS01735 (L6503_01735) - 380653..381132 (-) 480 WP_000571123.1 hypothetical protein -
  L6503_RS01740 (L6503_01740) - 381236..382024 (-) 789 WP_121293132.1 integrase -
  L6503_RS01745 (L6503_01745) - 382157..382726 (-) 570 WP_212867353.1 outer membrane beta-barrel protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10683.00 Da        Isoelectric Point: 10.9123

>NTDB_id=653522 L6503_RS01730 WP_000736478.1 380372..380656(-) (comB2) [Helicobacter pylori strain K115]
MKKLSHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=653522 L6503_RS01730 WP_000736478.1 380372..380656(-) (comB2) [Helicobacter pylori strain K115]
ATGAAAAAATTAAGTCATTTTAGAAAGCTCATCGCCTTTTTAGGTTTTTCACCACTTTTACTACAAGCGGATATGACTAC
CTTTTTTAATAGTATTGAACAACAACTCACTAGCCCCACCGCTAAGGGTATTTTGATGGTCATTTTTTTAGGGCTTGCTA
TTTTTATATGGAAAAATTTAGACAGATGGAAAGAAATCTTAATGACAGTCCTTGCTATTGCCATAGGCGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAATTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterProScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.143

96.809

0.553