Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   L6503_RS01725 Genome accession   NZ_CP091770
Coordinates   380098..380361 (-) Length   87 a.a.
NCBI ID   WP_001177712.1    Uniprot ID   A0AB33Z5Y9
Organism   Helicobacter pylori strain K115     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 375098..385361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6503_RS01700 (L6503_01700) - 375250..376095 (-) 846 Protein_334 transporter -
  L6503_RS01705 (L6503_01705) - 376182..376835 (+) 654 Protein_335 IS607 family transposase -
  L6503_RS01710 (L6503_01710) - 376810..378069 (+) 1260 WP_237775443.1 RNA-guided endonuclease InsQ/TnpB family protein -
  L6503_RS01715 (L6503_01715) - 378095..379851 (-) 1757 Protein_337 FtsK/SpoIIIE domain-containing protein -
  L6503_RS01720 (L6503_01720) - 379851..380087 (-) 237 WP_001183709.1 hypothetical protein -
  L6503_RS01725 (L6503_01725) comB3 380098..380361 (-) 264 WP_001177712.1 hypothetical protein Machinery gene
  L6503_RS01730 (L6503_01730) comB2 380372..380656 (-) 285 WP_000736478.1 TrbC/VirB2 family protein Machinery gene
  L6503_RS01735 (L6503_01735) - 380653..381132 (-) 480 WP_000571123.1 hypothetical protein -
  L6503_RS01740 (L6503_01740) - 381236..382024 (-) 789 WP_121293132.1 integrase -
  L6503_RS01745 (L6503_01745) - 382157..382726 (-) 570 WP_212867353.1 outer membrane beta-barrel protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10002.89 Da        Isoelectric Point: 5.7206

>NTDB_id=653521 L6503_RS01725 WP_001177712.1 380098..380361(-) (comB3) [Helicobacter pylori strain K115]
MQLVGISVSNLKEISSKEKFLWLNAKSFLIAGFIPFVMIPWLDFLNSLMLYVCFLLVFSIAEFFDEDISDILIAHSKIKT
KTNSFYA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=653521 L6503_RS01725 WP_001177712.1 380098..380361(-) (comB3) [Helicobacter pylori strain K115]
ATGCAATTAGTCGGCATTTCAGTTTCTAATCTAAAAGAAATCAGTTCTAAAGAAAAGTTTCTTTGGCTCAATGCTAAGAG
CTTTTTAATCGCAGGATTTATTCCTTTTGTAATGATACCTTGGCTAGATTTTTTAAATTCTTTAATGCTGTATGTGTGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGCGACATTTTAATCGCCCATTCTAAGATTAAAACC
AAAACTAATTCATTTTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

59.77

100

0.598