Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG764_RS12485 Genome accession   NZ_CP108095
Coordinates   2888951..2889646 (+) Length   231 a.a.
NCBI ID   WP_328968496.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00239     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2883951..2894646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG764_RS12460 (OG764_12455) - 2884566..2884889 (-) 324 WP_328968491.1 STAS domain-containing protein -
  OG764_RS12465 (OG764_12460) - 2885043..2885891 (-) 849 WP_328968492.1 3-hydroxyacyl-CoA dehydrogenase family protein -
  OG764_RS12470 (OG764_12465) - 2886088..2886660 (+) 573 WP_328968493.1 cob(I)yrinic acid a,c-diamide adenosyltransferase -
  OG764_RS12475 (OG764_12470) - 2887065..2887628 (-) 564 WP_328968494.1 hypothetical protein -
  OG764_RS12480 (OG764_12475) - 2887794..2889002 (+) 1209 WP_328968495.1 histidine kinase -
  OG764_RS12485 (OG764_12480) vraR 2888951..2889646 (+) 696 WP_328968496.1 response regulator transcription factor Regulator
  OG764_RS12490 (OG764_12485) - 2889820..2891661 (+) 1842 WP_328968497.1 glycoside hydrolase family 18 chitinase -
  OG764_RS12495 (OG764_12490) - 2891826..2892272 (-) 447 WP_328968498.1 DUF2550 domain-containing protein -
  OG764_RS12500 (OG764_12495) - 2892406..2892780 (-) 375 WP_328968499.1 F0F1 ATP synthase subunit epsilon -
  OG764_RS12505 (OG764_12500) atpD 2892909..2894351 (-) 1443 WP_266842334.1 F0F1 ATP synthase subunit beta -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 24080.91 Da        Isoelectric Point: 5.4425

>NTDB_id=653515 OG764_RS12485 WP_328968496.1 2888951..2889646(+) (vraR) [Streptomyces sp. NBC_00239]
MAGAGVLARRREGGGCVTIRVLVAEDQSAVRAGLVLILRSAGDIEVVGEAADGAEAVRLARELRPDLVLMDVQMPVLDGV
SATRQVVAEGLADVLVLTTFDLDEYVFGALRAGAAGFLLKNAEAAELITAVRTVARGEGLIAPAVTRRLIAEFAAPRVRS
ANAAQSAAVAGLTPREREVLSCLGQGLSNVEIAARLEMAEATAKTHVSRLLGKLELRSRLQAAVLAQELGI

Nucleotide


Download         Length: 696 bp        

>NTDB_id=653515 OG764_RS12485 WP_328968496.1 2888951..2889646(+) (vraR) [Streptomyces sp. NBC_00239]
ATGGCGGGTGCGGGCGTCCTTGCCCGCCGACGAGAAGGGGGCGGGTGCGTGACGATCCGGGTGCTGGTGGCCGAGGACCA
GTCGGCGGTGCGGGCCGGGCTGGTGCTGATCCTGCGCAGCGCGGGGGACATCGAGGTGGTGGGCGAGGCAGCGGACGGCG
CGGAGGCGGTCCGGCTGGCCCGGGAACTGCGTCCGGACCTGGTGCTGATGGACGTACAGATGCCGGTGCTCGACGGGGTG
TCGGCGACCCGGCAGGTGGTCGCCGAGGGGCTGGCCGACGTACTCGTCCTGACCACCTTCGATCTGGACGAGTACGTGTT
CGGGGCGCTGCGCGCGGGGGCCGCCGGCTTCCTGCTGAAGAACGCGGAGGCGGCGGAGCTGATCACGGCGGTGCGGACGG
TGGCGCGCGGGGAGGGCCTGATCGCACCGGCGGTGACCCGCCGCCTGATCGCCGAGTTCGCGGCCCCGCGGGTACGGAGT
GCCAACGCGGCGCAGAGCGCGGCGGTGGCGGGGCTGACGCCGCGCGAACGCGAGGTGCTGTCCTGCCTGGGTCAGGGGCT
GTCCAATGTGGAGATCGCGGCCCGGCTGGAGATGGCGGAGGCCACGGCGAAGACCCACGTCAGCAGGCTGCTGGGCAAGC
TGGAGCTTCGCAGCCGGCTCCAAGCGGCCGTGCTGGCACAGGAGTTGGGCATCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(21-132)

Bacterial regulatory proteins, luxR family (GerE)

(172-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.284

91.342

0.368