Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG764_RS08580 Genome accession   NZ_CP108095
Coordinates   1974042..1974671 (+) Length   209 a.a.
NCBI ID   WP_328967806.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00239     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1969042..1979671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG764_RS08560 (OG764_08565) - 1969689..1970492 (+) 804 WP_328967802.1 IclR family transcriptional regulator -
  OG764_RS08565 (OG764_08570) - 1970907..1971602 (-) 696 WP_328967803.1 ABC transporter ATP-binding protein -
  OG764_RS08570 (OG764_08575) - 1971599..1972690 (-) 1092 WP_328967804.1 ABC transporter permease -
  OG764_RS08575 (OG764_08580) - 1972838..1974010 (+) 1173 WP_328967805.1 sensor histidine kinase -
  OG764_RS08580 (OG764_08585) vraR 1974042..1974671 (+) 630 WP_328967806.1 response regulator transcription factor Regulator
  OG764_RS08585 (OG764_08590) - 1974706..1976172 (-) 1467 WP_328967807.1 PLP-dependent aminotransferase family protein -
  OG764_RS08590 (OG764_08595) - 1976274..1976492 (+) 219 WP_328967808.1 hypothetical protein -
  OG764_RS08595 (OG764_08600) - 1976665..1976958 (-) 294 WP_328967809.1 DUF5955 family protein -
  OG764_RS08600 (OG764_08605) - 1976998..1977618 (+) 621 WP_328967810.1 nucleotidyltransferase family protein -
  OG764_RS08605 (OG764_08610) aceB 1977865..1979484 (+) 1620 WP_328967811.1 malate synthase A -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 21733.14 Da        Isoelectric Point: 6.8842

>NTDB_id=653500 OG764_RS08580 WP_328967806.1 1974042..1974671(+) (vraR) [Streptomyces sp. NBC_00239]
MTIRLLLADDHPVVRAGLRAVLDTEPDFAVVAEASTAEQAVALAAAGPVDVVLMDLRFGAGMHGSEATAAITARPGAPRV
LVLTTYDTDADILAAVEAGASGYLLKDAPPEELAAAVRTAAAGQSALAPAVALRLMDRMRTPAQALTKRELEVLQLVADG
LSNQQISKKLFLSQATVKSHLVHVYAKLGVDSRTAAVALAGARRLIRTP

Nucleotide


Download         Length: 630 bp        

>NTDB_id=653500 OG764_RS08580 WP_328967806.1 1974042..1974671(+) (vraR) [Streptomyces sp. NBC_00239]
ATGACCATCAGGCTGCTGCTGGCCGACGACCACCCGGTGGTACGGGCCGGGCTGCGCGCGGTCCTCGACACCGAGCCGGA
CTTCGCGGTCGTCGCGGAGGCCTCGACCGCCGAGCAGGCGGTGGCGCTGGCCGCCGCCGGACCGGTCGACGTGGTCCTCA
TGGACCTCCGGTTCGGTGCCGGCATGCACGGCTCCGAGGCCACCGCGGCCATCACGGCCCGGCCCGGCGCCCCGCGGGTG
CTGGTCCTCACCACGTACGACACGGACGCGGACATCCTGGCGGCGGTCGAGGCGGGCGCCTCCGGCTACCTGCTCAAGGA
CGCCCCGCCGGAGGAGCTGGCGGCGGCGGTCCGTACGGCCGCGGCGGGCCAGTCGGCGCTGGCTCCGGCGGTGGCGCTGC
GCCTGATGGACCGGATGCGCACCCCGGCGCAGGCGCTGACCAAGCGGGAGCTGGAGGTGCTCCAGCTGGTCGCCGACGGC
CTCTCGAACCAGCAGATCAGCAAGAAGCTCTTCCTCAGCCAGGCCACGGTCAAGTCCCACCTGGTCCACGTCTACGCCAA
GCTCGGCGTCGACTCGCGCACGGCGGCCGTGGCGCTCGCGGGTGCCCGGCGCCTGATCCGCACGCCGTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(145-200)

Response regulator receiver domain (Response_reg)

(6-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.619

100

0.378