Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OHT59_RS13875 Genome accession   NZ_CP108094
Coordinates   3192210..3193406 (-) Length   398 a.a.
NCBI ID   WP_266474629.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00243     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3187210..3198406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT59_RS13855 (OHT59_13860) - 3187517..3187855 (-) 339 WP_164411711.1 P-II family nitrogen regulator -
  OHT59_RS13860 (OHT59_13865) - 3187852..3189186 (-) 1335 WP_326720438.1 ammonium transporter -
  OHT59_RS13865 (OHT59_13870) - 3189526..3190998 (-) 1473 WP_326720439.1 hypothetical protein -
  OHT59_RS13870 (OHT59_13875) - 3191446..3192108 (+) 663 WP_326720440.1 bifunctional DNA primase/polymerase -
  OHT59_RS13875 (OHT59_13880) pilA 3192210..3193406 (-) 1197 WP_266474629.1 signal recognition particle-docking protein FtsY Machinery gene
  OHT59_RS13880 (OHT59_13885) - 3193598..3194569 (+) 972 WP_326720441.1 LLM class flavin-dependent oxidoreductase -
  OHT59_RS13885 (OHT59_13890) - 3194709..3196124 (-) 1416 WP_326720442.1 sugar porter family MFS transporter -

Sequence

Protein


Download         Length: 398 a.a.        Molecular weight: 42242.44 Da        Isoelectric Point: 4.4518

>NTDB_id=653415 OHT59_RS13875 WP_266474629.1 3192210..3193406(-) (pilA) [Streptomyces sp. NBC_00243]
MEIVILAVVIAVVVIGALGGLVVGSRKRKLPPPPPVAPDITAPPAEPHVGDEAETPREEPRRTIEEVDLPEAASAPVAVE
EPPALPEIEVPEPSAGRLVRLRARLSRSQNALGKGLLTLLSREHLDEDTWEEIEDTLLTADVGVQPTQELVDRLRERVKV
LGTRTPDELRALLREELLQLLVPEFDRTVKTDSNLDTPGIVMVVGVNGTGKTTTTGKLARVLVADGKHVLLGAADTFRAA
AADQLQTWGERVGARTVRGPEGGDPASIAFDAVKEGIEEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHAPLDEILL
VLDATTGQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLVGLGEGADDLAPFEPEAFVDALIGE

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=653415 OHT59_RS13875 WP_266474629.1 3192210..3193406(-) (pilA) [Streptomyces sp. NBC_00243]
ATGGAAATCGTCATCCTTGCTGTAGTCATCGCCGTCGTCGTGATCGGCGCGCTCGGCGGGCTGGTCGTCGGCAGCCGCAA
GCGGAAGCTGCCTCCGCCGCCCCCCGTCGCCCCCGACATCACCGCCCCTCCGGCCGAGCCGCACGTCGGCGACGAGGCCG
AGACGCCGCGGGAGGAACCGCGCCGCACGATAGAAGAGGTGGACCTCCCGGAGGCCGCCTCGGCTCCCGTCGCGGTCGAG
GAACCCCCGGCCCTTCCCGAGATCGAGGTCCCGGAGCCCTCCGCGGGGCGCCTGGTGCGTCTGCGCGCCCGGCTCTCCCG
CTCGCAGAACGCGCTCGGCAAGGGGCTGCTCACGCTGCTCTCGCGCGAGCACCTCGACGAGGACACCTGGGAGGAGATCG
AGGACACGCTGCTCACCGCCGACGTCGGCGTACAGCCCACCCAGGAGCTGGTCGACCGGCTGCGTGAGCGTGTGAAGGTG
CTCGGCACCCGTACGCCGGACGAGCTGCGCGCTCTCCTGCGCGAGGAGCTGCTCCAGCTGCTCGTTCCCGAGTTCGACCG
CACGGTCAAGACCGACTCGAACCTCGACACCCCGGGCATCGTCATGGTCGTCGGGGTCAACGGAACCGGCAAGACGACCA
CCACGGGCAAGCTCGCCCGCGTGCTCGTGGCCGACGGCAAGCACGTCCTCTTGGGCGCCGCCGACACCTTCCGTGCCGCC
GCCGCCGACCAGCTGCAGACCTGGGGCGAGCGGGTGGGCGCCCGTACCGTGCGCGGTCCCGAGGGCGGCGACCCGGCCTC
GATCGCCTTCGACGCGGTCAAGGAGGGCATCGAGGAGGGCGCCGACGTCGTCCTCATCGACACCGCGGGCCGGCTGCACA
CGAAGACCGGGCTCATGGACGAGCTCGGCAAGGTCAAGCGCGTCGTCGAGAAGCACGCGCCACTGGACGAGATCCTGCTC
GTCCTCGACGCCACCACCGGGCAGAACGGTCTCGTCCAGGCCCGTGTCTTCGCCGAGGTCGTCGACATCACCGGCATCGT
GCTGACCAAGCTCGACGGGACGGCCAAGGGCGGCATCGTGATCGCGGTGCAGCGCGAGCTGGGCGTGCCGGTCAAGCTGG
TGGGTCTGGGCGAGGGGGCGGACGATCTGGCGCCGTTCGAGCCGGAGGCGTTCGTTGACGCCCTTATCGGAGAGTAG

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(200-396)

SRP54-type protein, helical bundle domain (SRP54_N)

(112-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

42.286

87.94

0.372