Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHT59_RS12805 Genome accession   NZ_CP108094
Coordinates   2927406..2928182 (+) Length   258 a.a.
NCBI ID   WP_266474334.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00243     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2922406..2933182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT59_RS12790 (OHT59_12795) - 2922604..2923137 (+) 534 WP_326720268.1 TerD family protein -
  OHT59_RS12795 (OHT59_12800) - 2923279..2926173 (-) 2895 WP_326720269.1 vitamin B12-dependent ribonucleotide reductase -
  OHT59_RS12800 (OHT59_12805) nrdR 2926324..2926887 (-) 564 WP_326720270.1 transcriptional regulator NrdR -
  OHT59_RS12805 (OHT59_12810) dinR/lexA 2927406..2928182 (+) 777 WP_266474334.1 transcriptional repressor LexA Regulator
  OHT59_RS12810 (OHT59_12815) - 2928615..2930591 (-) 1977 WP_326720271.1 ATP-dependent DNA helicase -
  OHT59_RS12815 (OHT59_12820) - 2930680..2932854 (-) 2175 WP_326720272.1 IucA/IucC family siderophore biosynthesis protein -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 27935.63 Da        Isoelectric Point: 7.4756

>NTDB_id=653409 OHT59_RS12805 WP_266474334.1 2927406..2928182(+) (dinR/lexA) [Streptomyces sp. NBC_00243]
MTTTADSATITAQDRSQGRLEPVHAMNEAANHEGPKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQSSAQPTDTAGKPAASYVPLVGRIAAGGPILAEESVEDV
FPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLEGEATVKRFKREDGHVWLLPHNSAYQPI
PGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 777 bp        

>NTDB_id=653409 OHT59_RS12805 WP_266474334.1 2927406..2928182(+) (dinR/lexA) [Streptomyces sp. NBC_00243]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGGGCCGACTCGAGCCGGTGCATGCGATGAA
CGAAGCTGCGAATCATGAGGGGCCCAAGCGTTCCCTGCCGGGCCGACCTCCAGGCATCCGGGCGGACAGCTCGGGCCTCA
CCGACCGGCAACGCCGGGTGATCGAGGTCATCAGGGACTCCGTGCAGCGGCGCGGCTACCCGCCGTCGATGCGGGAGATC
GGACAGGCTGTCGGCCTTTCCAGCACCTCCTCGGTCGCGCATCAACTGATGGCACTGGAGCGCAAGGGCTTCCTGCGGCG
CGACCCGCACCGCCCGCGCGCGTACGAGGTCAGGGGCTCGGATCAGTCCTCGGCACAGCCCACGGACACGGCGGGCAAGC
CGGCCGCGTCGTACGTCCCGCTCGTGGGCCGTATCGCCGCAGGTGGGCCGATCCTGGCCGAGGAGTCGGTGGAGGACGTG
TTCCCCCTCCCCCGCCAGCTGGTCGGCGACGGCGAGCTGTTCGTGCTGAAGGTCGTCGGTGACTCGATGATCGAGGCCGC
CATCTGCGACGGAGACTGGGTCACGGTCCGCCGCCAGCCGGTCGCGGAGAACGGCGACATCGTGGCCGCCATGCTTGAAG
GCGAGGCCACGGTGAAGCGCTTCAAGCGCGAGGACGGGCATGTGTGGCTCCTGCCGCACAACTCCGCGTACCAGCCGATT
CCCGGCGACGAGGCGACCATCCTCGGCAAGGTCGTGGCAGTGCTGCGGCGCGTCTAG

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(140-252)

LexA DNA binding domain (LexA_DNA_bind)

(51-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.714

81.395

0.372