Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHT52_RS16625 Genome accession   NZ_CP108093
Coordinates   3888606..3889268 (-) Length   220 a.a.
NCBI ID   WP_328720990.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00247     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3883606..3894268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT52_RS16610 (OHT52_16585) - 3886601..3887080 (+) 480 WP_328720986.1 GNAT family N-acetyltransferase -
  OHT52_RS16615 (OHT52_16590) - 3887312..3887959 (+) 648 WP_328723767.1 pentapeptide repeat-containing protein -
  OHT52_RS16620 (OHT52_16595) - 3887979..3888476 (-) 498 WP_328720988.1 hypothetical protein -
  OHT52_RS16625 (OHT52_16600) vraR 3888606..3889268 (-) 663 WP_328720990.1 response regulator transcription factor Regulator
  OHT52_RS16630 (OHT52_16605) - 3889265..3890539 (-) 1275 WP_328720992.1 sensor histidine kinase -
  OHT52_RS16635 (OHT52_16610) - 3890914..3891513 (+) 600 WP_328720994.1 heme-binding protein -
  OHT52_RS16640 (OHT52_16615) - 3891750..3893153 (+) 1404 WP_328723768.1 M1 family metallopeptidase -
  OHT52_RS16645 (OHT52_16620) - 3893288..3893863 (-) 576 WP_328720996.1 TerD family protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23063.36 Da        Isoelectric Point: 6.2600

>NTDB_id=653360 OHT52_RS16625 WP_328720990.1 3888606..3889268(-) (vraR) [Streptomyces sp. NBC_00247]
MNRRTVRVLVCDDHAVVRAGLLALLGSEPDLDVVAEAGSGEEAVVLAARLTPDVVLMDLQLGPGMDGVEATRRITAAAGE
TGGTGGTGTGPHVLVLTTYDTDADITRAIGAGATGYLLKAERPEELFAAIRSAAQGRTTLSPPVADRVMARLRTPPPALT
DRERDILGQLARGLGNRDIARALFISEATVKTHLGRIYDKLGVETRAGAVAKANEQRLLP

Nucleotide


Download         Length: 663 bp        

>NTDB_id=653360 OHT52_RS16625 WP_328720990.1 3888606..3889268(-) (vraR) [Streptomyces sp. NBC_00247]
ATGAACCGCCGTACCGTACGCGTCCTGGTCTGCGACGATCACGCCGTCGTCCGCGCCGGGCTGCTCGCCCTGCTCGGCAG
CGAGCCGGACCTCGACGTCGTGGCCGAGGCCGGCAGCGGCGAGGAGGCCGTGGTCCTGGCCGCCCGGCTGACCCCGGACG
TCGTCCTCATGGACCTCCAGCTCGGCCCCGGCATGGACGGCGTCGAGGCCACCCGCCGGATCACCGCCGCCGCCGGAGAG
ACCGGCGGCACGGGCGGCACCGGAACGGGCCCCCACGTGCTCGTCCTCACGACGTACGACACCGACGCCGACATCACCCG
GGCGATCGGCGCGGGCGCCACCGGCTACCTGCTGAAGGCGGAGCGCCCGGAGGAACTGTTCGCCGCGATCCGGTCCGCCG
CACAGGGCCGCACCACGCTGTCGCCGCCCGTCGCGGACCGGGTGATGGCCCGGCTGCGCACCCCGCCGCCCGCGCTCACC
GACCGCGAGCGGGACATCCTCGGGCAGCTCGCCCGGGGGCTCGGCAACCGGGACATCGCCCGCGCGCTCTTCATCAGCGA
AGCGACGGTCAAGACCCACCTGGGGCGCATCTACGACAAGCTGGGCGTCGAGACCCGCGCCGGTGCTGTCGCCAAGGCCA
ACGAGCAACGCCTGCTCCCGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(158-212)

Response regulator receiver domain (Response_reg)

(8-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.53

99.545

0.364