Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OHT52_RS11265 Genome accession   NZ_CP108093
Coordinates   2707030..2708028 (-) Length   332 a.a.
NCBI ID   WP_328720007.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00247     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2702030..2713028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT52_RS11245 (OHT52_11230) - 2702041..2704326 (-) 2286 WP_328720003.1 molybdopterin oxidoreductase family protein -
  OHT52_RS11250 (OHT52_11235) - 2704395..2705564 (-) 1170 WP_328720004.1 MFS transporter -
  OHT52_RS11255 - 2705594..2705767 (-) 174 WP_328720005.1 hypothetical protein -
  OHT52_RS11260 (OHT52_11245) - 2706011..2706757 (+) 747 WP_328720006.1 DUF6227 family protein -
  OHT52_RS11265 (OHT52_11250) rpoS 2707030..2708028 (-) 999 WP_328720007.1 sigma-70 family RNA polymerase sigma factor Regulator
  OHT52_RS11270 (OHT52_11255) - 2708177..2708722 (+) 546 WP_328720008.1 N-acetyltransferase family protein -
  OHT52_RS11275 (OHT52_11260) - 2708741..2709523 (-) 783 WP_328720009.1 class III extradiol ring-cleavage dioxygenase -
  OHT52_RS11280 (OHT52_11265) - 2709685..2710188 (+) 504 WP_328720010.1 MarR family transcriptional regulator -
  OHT52_RS11285 (OHT52_11270) - 2710351..2711886 (-) 1536 WP_328720011.1 MFS transporter -
  OHT52_RS11290 (OHT52_11275) - 2712305..2712961 (-) 657 WP_328720012.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37180.81 Da        Isoelectric Point: 5.0568

>NTDB_id=653349 OHT52_RS11265 WP_328720007.1 2707030..2708028(-) (rpoS) [Streptomyces sp. NBC_00247]
MATRAVARRSSPTGGTERARSVRGGSGEIADRDLVGMYLDEIARTPLLDAAKEVELSQAIEAGVYARKILDGEVESDAGG
AKPEELEALFDESERAKDVFIRSNLRLVVAVARRYPRAGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGRDPEHAEIAAELDSNTERVSNVLDWARDPVSLNMPVDDNGDTQF
GDLLEDTSAVSPEQSVMSLLRSEELEELIGKLDNRTASIIRMRYGIEDGRERTLTEVGKEHGLTRERIRQIEKHALVELK
RMARDTGFDAAA

Nucleotide


Download         Length: 999 bp        

>NTDB_id=653349 OHT52_RS11265 WP_328720007.1 2707030..2708028(-) (rpoS) [Streptomyces sp. NBC_00247]
ATGGCAACCCGTGCCGTCGCCCGTCGTTCGTCACCCACCGGTGGGACCGAACGGGCCCGCAGTGTTCGCGGTGGAAGCGG
AGAGATCGCCGACCGCGACCTGGTCGGCATGTACCTCGACGAGATCGCGCGAACGCCCCTGCTCGACGCCGCCAAGGAGG
TCGAGCTGTCGCAGGCAATCGAGGCGGGTGTGTACGCCCGCAAGATCCTCGACGGTGAGGTCGAGAGCGACGCAGGTGGG
GCGAAGCCCGAGGAGCTGGAAGCGCTGTTCGACGAGAGCGAGCGCGCCAAGGACGTCTTCATCCGCTCCAACCTCCGTCT
CGTCGTCGCCGTGGCCCGTCGCTACCCGCGCGCGGGTCTGCCGCTGCTCGACCTGATCCAGGAGGGGAACGCCGGCCTGG
TGCGCGCGGTCGAGAAGTTCGACTACGCCAAGGGCTTCAAGTTCTCCACGTACGCCACCTGGTGGATCCGTCAGGCCATC
ACCCGCTCGATAGCGGACCAGTCGCGCACGATCCGCCTCCCCGTCCACCTGGTGGAAGAGCTGGGCCGCATCCGCAGGGT
CCAGCGCGAGTTCAACCGTGAGCACGGACGCGACCCGGAGCACGCGGAGATCGCCGCGGAGCTGGACTCCAACACCGAGC
GGGTCAGCAACGTCCTGGACTGGGCCCGCGACCCGGTCAGCCTCAACATGCCGGTCGACGACAACGGCGACACGCAGTTC
GGCGACCTGCTGGAGGACACCTCCGCCGTCTCGCCCGAGCAGTCCGTGATGTCGCTGCTGCGCAGCGAGGAGCTGGAGGA
GCTGATCGGCAAGCTCGACAACCGCACCGCCTCCATCATCCGGATGCGTTACGGAATCGAGGACGGCCGTGAGCGGACGC
TGACCGAAGTGGGCAAGGAACACGGTCTGACGCGTGAGCGGATCCGCCAGATCGAGAAGCACGCGTTGGTCGAATTGAAG
CGAATGGCGCGCGACACGGGCTTTGACGCTGCGGCGTGA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(179-255)

Sigma-70 region 2 (Sigma70_r2)

(100-169)

Sigma-70, region 4 (Sigma70_r4)

(269-320)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(33-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40

90.361

0.361