Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OHT52_RS06495 Genome accession   NZ_CP108093
Coordinates   1628914..1630116 (-) Length   400 a.a.
NCBI ID   WP_328719180.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00247     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1623914..1635116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT52_RS06475 (OHT52_06470) - 1624061..1624399 (-) 339 WP_299533529.1 P-II family nitrogen regulator -
  OHT52_RS06480 (OHT52_06475) - 1624396..1625745 (-) 1350 WP_328719177.1 ammonium transporter -
  OHT52_RS06485 (OHT52_06480) - 1626252..1627727 (-) 1476 WP_328719178.1 hypothetical protein -
  OHT52_RS06490 (OHT52_06485) - 1628173..1628832 (+) 660 WP_328719179.1 bifunctional DNA primase/polymerase -
  OHT52_RS06495 (OHT52_06490) pilA 1628914..1630116 (-) 1203 WP_328719180.1 signal recognition particle-docking protein FtsY Machinery gene
  OHT52_RS06500 (OHT52_06495) - 1630380..1631798 (-) 1419 WP_328719181.1 sugar porter family MFS transporter -

Sequence

Protein


Download         Length: 400 a.a.        Molecular weight: 41787.66 Da        Isoelectric Point: 4.4586

>NTDB_id=653339 OHT52_RS06495 WP_328719180.1 1628914..1630116(-) (pilA) [Streptomyces sp. NBC_00247]
MEIVILAVVIALVAVGLISGLVVSSRKKKQLPPSAPSSTPTITPPAEPRAGEESEAPRDEARRTTEEAGLPDAEAPAGEA
PAAAAEAPALDVPEPTAGRLVRLRARLARSQNSLGKGLLTLLSRDNLDEDTWEEIEDTLLTADVGVAPTQELVERLRERV
RVLGTRTPEELRALLREELITLLGPDLDREVRTEGGAETPGVVMVVGVNGTGKTTTTGKLARVLVADGRSVVLGAADTFR
AAAADQLQTWGERVGARTVRGPEGGDPASIAFDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHGPLDEI
LLVLDATTGQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLIGLGEGPDDLAPFEPGAFVDALIGD

Nucleotide


Download         Length: 1203 bp        

>NTDB_id=653339 OHT52_RS06495 WP_328719180.1 1628914..1630116(-) (pilA) [Streptomyces sp. NBC_00247]
ATGGAAATCGTCATCCTTGCTGTAGTCATCGCCCTGGTCGCTGTCGGCCTGATCAGCGGGCTCGTGGTCAGCAGCCGCAA
GAAGAAGCAGCTGCCGCCCTCGGCGCCGTCGAGCACGCCGACCATCACTCCTCCCGCCGAACCCCGTGCCGGTGAGGAGT
CCGAGGCGCCGCGCGACGAAGCGCGGCGCACCACCGAGGAAGCCGGTCTCCCGGACGCCGAGGCCCCTGCCGGGGAAGCC
CCGGCCGCCGCGGCAGAGGCTCCCGCCCTCGACGTCCCCGAGCCCACCGCGGGCCGTCTCGTACGGCTCCGCGCGCGGCT
CGCCCGCTCGCAGAACTCCCTCGGCAAGGGGCTGCTCACGCTCCTGTCCCGGGACAATCTCGACGAGGACACCTGGGAGG
AGATCGAGGACACCCTCCTCACCGCCGACGTCGGCGTGGCTCCCACCCAGGAGCTCGTCGAGCGCCTGCGCGAACGCGTC
CGGGTGCTCGGCACCCGGACCCCCGAGGAGCTCCGCGCCCTGCTGCGCGAAGAGCTGATCACTCTGCTGGGCCCCGACCT
CGACCGTGAGGTCAGGACCGAGGGCGGCGCCGAGACCCCGGGCGTCGTCATGGTCGTCGGCGTCAACGGCACCGGCAAGA
CCACCACGACCGGCAAGCTGGCCCGGGTGCTCGTGGCCGACGGCCGCAGCGTGGTCCTCGGCGCGGCCGACACCTTCCGC
GCCGCCGCCGCCGACCAGCTCCAGACCTGGGGCGAGCGCGTCGGAGCACGTACGGTACGCGGCCCCGAGGGCGGCGACCC
CGCGTCGATCGCCTTCGACGCCGTGAAGGAGGGCATCGCCGAGGGTGCGGACGTGGTGCTCATCGACACCGCCGGCCGGC
TGCACACCAAGACCGGCCTGATGGACGAGCTCGGCAAGGTCAAGCGCGTCGTGGAGAAGCACGGCCCGCTCGACGAGATC
CTGCTCGTCCTCGACGCCACCACCGGCCAGAACGGTCTGGTCCAGGCCCGGGTCTTCGCCGAGGTGGTGGACATCACCGG
CATCGTCCTGACCAAGCTCGACGGCACCGCCAAGGGCGGCATCGTCATCGCCGTCCAGCGTGAGCTGGGGGTCCCGGTGA
AGCTCATCGGGCTCGGAGAGGGACCGGACGACCTGGCCCCGTTCGAGCCGGGCGCCTTCGTCGACGCGCTGATCGGCGAC
TGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(114-179)

SRP54-type protein, GTPase domain (SRP54)

(201-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

43.478

92

0.4