Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHT52_RS05455 Genome accession   NZ_CP108093
Coordinates   1382798..1383595 (+) Length   265 a.a.
NCBI ID   WP_328718996.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00247     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1377798..1388595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT52_RS05445 (OHT52_05445) - 1378675..1381572 (-) 2898 WP_328718994.1 vitamin B12-dependent ribonucleotide reductase -
  OHT52_RS05450 (OHT52_05450) nrdR 1381733..1382239 (-) 507 WP_328718995.1 transcriptional regulator NrdR -
  OHT52_RS05455 (OHT52_05455) dinR/lexA 1382798..1383595 (+) 798 WP_328718996.1 transcriptional repressor LexA Regulator
  OHT52_RS05460 (OHT52_05460) - 1383818..1385788 (-) 1971 WP_328718997.1 ATP-dependent DNA helicase -
  OHT52_RS05465 (OHT52_05465) - 1385827..1387695 (-) 1869 WP_328718998.1 IucA/IucC family siderophore biosynthesis protein -
  OHT52_RS05470 (OHT52_05470) - 1387771..1388514 (-) 744 WP_328718999.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 28781.54 Da        Isoelectric Point: 7.4761

>NTDB_id=653335 OHT52_RS05455 WP_328718996.1 1382798..1383595(+) (dinR/lexA) [Streptomyces sp. NBC_00247]
MTTSADSATITARDHRSPSRPEPVHAMNDSVTNPDGPEPPRAARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGY
PPSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPISQQTDTTGKPAASYVPLVGRIAAGGPILA
EESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLEGEATVKRFRREDGHVWLLPH
NSAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 798 bp        

>NTDB_id=653335 OHT52_RS05455 WP_328718996.1 1382798..1383595(+) (dinR/lexA) [Streptomyces sp. NBC_00247]
GTGACCACCAGCGCCGACAGTGCCACGATCACTGCCCGGGACCACCGCTCTCCGAGCCGACCTGAGCCGGTGCATGCAAT
GAATGACTCTGTCACGAACCCGGACGGGCCGGAGCCCCCCAGGGCCGCGCGCTCCTTGCCCGGGCGTCCACCTGGCATCC
GGGCCGACAGTTCGGGCCTCACGGACCGGCAACGGCGGGTCATCGAGGTCATCCGCGACTCGGTGCAGCGCCGGGGGTAC
CCACCGTCGATGCGGGAGATCGGGCAGGCCGTCGGCCTGTCCAGCACCTCGTCGGTGGCCCACCAGCTCATGGCCCTGGA
GCGCAAGGGTTTCCTGCGCAGGGACCCGCACCGCCCGCGGGCGTACGAGGTCCGGGGCTCGGACCAGCCCATTTCGCAGC
AGACGGACACGACGGGCAAGCCCGCCGCCTCGTACGTCCCCCTGGTCGGCCGGATCGCGGCCGGTGGTCCGATCCTCGCC
GAGGAATCGGTGGAGGACGTCTTCCCGCTCCCGCGCCAACTGGTCGGTGACGGGGAGCTGTTCGTGCTCAAGGTGGTCGG
CGACTCCATGATCGAGGCCGCCATCTGCGACGGCGACTGGGTCACTGTACGCCGCCAGCCCGTCGCCGAGAACGGCGACA
TCGTCGCGGCCATGCTGGAGGGCGAGGCCACGGTCAAGCGGTTCCGTCGCGAGGACGGCCATGTGTGGCTGCTCCCGCAC
AACTCCGCGTACCAGCCGATCCCCGGCGACGAGGCGACCATTCTCGGCAAGGTCGTGGCCGTACTGCGGCGCGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(147-259)

LexA DNA binding domain (LexA_DNA_bind)

(58-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.19

79.245

0.366