Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG259_RS40260 Genome accession   NZ_CP108088
Coordinates   8945357..8946019 (-) Length   220 a.a.
NCBI ID   WP_328946787.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00250     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8940357..8951019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG259_RS40225 (OG259_40240) - 8940577..8941182 (-) 606 WP_328946782.1 hypothetical protein -
  OG259_RS40235 (OG259_40250) - 8941978..8942358 (-) 381 WP_328947321.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  OG259_RS40240 (OG259_40255) - 8942654..8943196 (-) 543 WP_328946783.1 2'-5' RNA ligase family protein -
  OG259_RS40245 (OG259_40260) - 8943379..8944230 (-) 852 WP_328946784.1 LysR substrate-binding domain-containing protein -
  OG259_RS40250 (OG259_40265) - 8944312..8944806 (+) 495 WP_328946785.1 cupin domain-containing protein -
  OG259_RS40255 (OG259_40270) - 8944974..8945333 (+) 360 WP_328946786.1 DoxX family protein -
  OG259_RS40260 (OG259_40275) vraR 8945357..8946019 (-) 663 WP_328946787.1 response regulator transcription factor Regulator
  OG259_RS40265 (OG259_40280) - 8945994..8947166 (-) 1173 WP_328946788.1 histidine kinase -
  OG259_RS40270 (OG259_40285) - 8947342..8949612 (+) 2271 WP_328946789.1 MMPL family transporter -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23420.18 Da        Isoelectric Point: 5.0710

>NTDB_id=653331 OG259_RS40260 WP_328946787.1 8945357..8946019(-) (vraR) [Streptomyces sp. NBC_00250]
MPIRVLVADDQAIIRTGLRIMLNAQPGIEVVGEAADGQEAVRLARELRPDVCLFDIRMPVLDGLEATRLVAGPGVADPLA
VVVITTFDLDEYVYGSLRAGARGFLLKDTGPDLLAQAVRSASDGEALIAPSVTVRLLQAFADLPAGRPAAQPVSPVTARE
EQVLLAVARGLTNTEIADALHISLSTVKTHLASLMAKLGARNRVEIAMWAYETRRILPGT

Nucleotide


Download         Length: 663 bp        

>NTDB_id=653331 OG259_RS40260 WP_328946787.1 8945357..8946019(-) (vraR) [Streptomyces sp. NBC_00250]
GTGCCCATCCGCGTCCTCGTCGCTGACGACCAGGCCATCATCCGCACCGGGCTGCGGATCATGCTGAACGCCCAGCCCGG
CATCGAGGTGGTCGGCGAGGCAGCCGACGGACAGGAAGCGGTACGTCTGGCCCGCGAACTGCGCCCCGACGTCTGCCTGT
TCGACATCCGCATGCCCGTACTCGACGGGCTCGAGGCCACCCGGCTGGTCGCCGGCCCGGGCGTCGCCGACCCGCTGGCC
GTGGTCGTCATCACCACGTTCGACCTCGACGAGTACGTCTACGGCTCACTGCGTGCCGGCGCCCGCGGATTCCTCCTCAA
GGACACAGGACCGGACCTTCTGGCCCAGGCCGTACGGTCGGCGTCCGACGGGGAGGCGCTCATCGCGCCCAGCGTCACCG
TCCGTCTGCTCCAGGCGTTCGCGGACCTGCCCGCCGGCCGGCCCGCGGCCCAGCCGGTCTCCCCCGTCACCGCCCGCGAG
GAGCAGGTGCTCCTCGCCGTCGCCCGCGGGCTGACCAACACCGAGATCGCCGACGCGCTGCACATCAGCCTCAGCACGGT
GAAGACGCATCTGGCCAGCCTGATGGCCAAACTCGGCGCCCGCAACCGGGTCGAGATCGCGATGTGGGCCTACGAGACGC
GCCGCATCCTCCCCGGAACCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)

Response regulator receiver domain (Response_reg)

(5-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.037

98.182

0.364