Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG259_RS11430 Genome accession   NZ_CP108088
Coordinates   2569500..2570288 (+) Length   262 a.a.
NCBI ID   WP_030325322.1    Uniprot ID   A0ABW6XU99
Organism   Streptomyces sp. NBC_00250     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2564500..2575288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG259_RS11415 (OG259_11435) - 2564881..2565411 (+) 531 WP_328942183.1 TerD family protein -
  OG259_RS11420 (OG259_11440) - 2565491..2568385 (-) 2895 WP_328942184.1 vitamin B12-dependent ribonucleotide reductase -
  OG259_RS11425 (OG259_11445) nrdR 2568556..2569065 (-) 510 WP_030325324.1 transcriptional regulator NrdR -
  OG259_RS11430 (OG259_11450) dinR/lexA 2569500..2570288 (+) 789 WP_030325322.1 transcriptional repressor LexA Regulator
  OG259_RS11435 (OG259_11455) - 2570396..2572369 (-) 1974 WP_328942185.1 ATP-dependent DNA helicase -
  OG259_RS11440 (OG259_11460) - 2572420..2574339 (-) 1920 WP_328942186.1 IucA/IucC family siderophore biosynthesis protein -
  OG259_RS11445 (OG259_11465) - 2574407..2575093 (-) 687 WP_328942187.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 28354.09 Da        Isoelectric Point: 6.9852

>NTDB_id=653261 OG259_RS11430 WP_030325322.1 2569500..2570288(+) (dinR/lexA) [Streptomyces sp. NBC_00250]
MTTTADSATITAQDRSQGRLEPVHAMNDTSMNGEDPGRPARALPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPS
MREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILAEES
VEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNAA
YQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 789 bp        

>NTDB_id=653261 OG259_RS11430 WP_030325322.1 2569500..2570288(+) (dinR/lexA) [Streptomyces sp. NBC_00250]
GTGACCACCACCGCAGACAGTGCCACCATCACCGCCCAGGACCGCTCCCAGGGCCGACTCGAGCCGGTGCACGCCATGAA
TGACACAAGCATGAACGGCGAGGACCCCGGGCGACCTGCCCGCGCCCTCCCCGGGCGACCTCCAGGCATCCGAGCCGACA
GCTCCGGTCTCACCGACCGGCAGCGCAGGGTCATCGAAGTCATCCGCGACTCGGTCCAGAGGCGCGGCTACCCGCCGTCG
ATGCGCGAGATCGGACAGGCGGTCGGCCTGTCCAGCACGTCCTCGGTGGCGCACCAGCTCATGGCGCTCGAGCGAAAGGG
CTTCCTCCGCCGCGACCCGCACCGCCCCCGGGCGTACGAGGTACGCGGCTCCGACCAGCCGAGCACCCAGCCGACGGACA
CCACGGGCAAGCCGGCCGCGTCGTACGTGCCCCTGGTCGGCCGGATCGCGGCCGGTGGCCCGATCCTCGCCGAGGAGTCC
GTCGAGGACGTCTTCCCTCTCCCCCGGCAGCTGGTCGGTGACGGCGAGCTGTTCGTCCTCAAGGTCGTCGGCGACTCCAT
GATCGAGGCCGCCATCTGTGACGGCGACTGGGTCACCGTCCGGCGGCAGCCCGTCGCGGAGAACGGCGACATCGTCGCGG
CGATGCTGGACGGCGAGGCCACGGTCAAGCGCTTCAAGCGCGAGGACGGTCATGTCTGGCTGCTCCCGCACAACGCGGCG
TACCAGCCGATCCCCGGCGACGAGGCGACGATCCTCGGCAAGGTCGTGGCGGTACTGCGGCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(144-256)

LexA DNA binding domain (LexA_DNA_bind)

(55-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80.916

0.374