Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   L6L55_RS09185 Genome accession   NZ_CP091700
Coordinates   1737895..1738524 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain KFu019     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1732895..1743524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6L55_RS09165 (L6L55_09165) ycbZ 1733296..1735056 (-) 1761 WP_000156518.1 Lon protease family protein -
  L6L55_RS09170 (L6L55_09170) matP 1735242..1735694 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  L6L55_RS09175 (L6L55_09175) ompA 1735770..1736810 (-) 1041 WP_000750416.1 porin OmpA -
  L6L55_RS09180 (L6L55_09180) sulA 1737167..1737676 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  L6L55_RS09185 (L6L55_09185) sxy/tfoX 1737895..1738524 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  L6L55_RS09190 (L6L55_09190) yccS 1738487..1740649 (-) 2163 WP_000875015.1 YccS family putative transporter -
  L6L55_RS09195 (L6L55_09195) yccF 1740659..1741105 (-) 447 WP_001261235.1 YccF domain-containing protein -
  L6L55_RS09200 (L6L55_09200) helD 1741228..1743282 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=653252 L6L55_RS09185 WP_000839153.1 1737895..1738524(+) (sxy/tfoX) [Escherichia coli strain KFu019]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=653252 L6L55_RS09185 WP_000839153.1 1737895..1738524(+) (sxy/tfoX) [Escherichia coli strain KFu019]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1