Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LBCZ_RS00940 Genome accession   NZ_AP012544
Coordinates   193132..194931 (-) Length   599 a.a.
NCBI ID   WP_039639682.1    Uniprot ID   -
Organism   Lacticaseibacillus casei DSM 20011 = JCM 1134 = ATCC 393     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 188132..199931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LBCZ_RS00915 (LBCZ_0179) - 189397..189741 (+) 345 WP_025013473.1 hypothetical protein -
  LBCZ_RS00920 (LBCZ_0180) - 189815..190534 (+) 720 WP_039639686.1 metal ABC transporter ATP-binding protein -
  LBCZ_RS00925 (LBCZ_0181) - 190531..191328 (+) 798 WP_010489770.1 metal ABC transporter permease -
  LBCZ_RS00930 (LBCZ_0182) - 191409..192257 (-) 849 WP_025013474.1 metallophosphoesterase family protein -
  LBCZ_RS00935 (LBCZ_0183) - 192254..193135 (-) 882 WP_039639684.1 NAD(P)-dependent oxidoreductase -
  LBCZ_RS00940 (LBCZ_0184) pepF 193132..194931 (-) 1800 WP_039639682.1 oligoendopeptidase F Regulator
  LBCZ_RS00945 (LBCZ_0185) - 195060..196154 (+) 1095 WP_039639680.1 LCP family protein -
  LBCZ_RS00950 (LBCZ_0186) - 196333..197127 (-) 795 Protein_188 branched-chain amino acid transport system II carrier protein -
  LBCZ_RS00955 (LBCZ_0187) - 197214..198266 (-) 1053 WP_010620018.1 IS30 family transposase -
  LBCZ_RS00960 (LBCZ_0188) - 198390..198986 (-) 597 Protein_190 branched-chain amino acid transport system II carrier protein -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 67117.18 Da        Isoelectric Point: 5.7584

>NTDB_id=65323 LBCZ_RS00940 WP_039639682.1 193132..194931(-) (pepF) [Lacticaseibacillus casei DSM 20011 = JCM 1134 = ATCC 393]
MQHLPVREDVPTKLTWDLTTIYPNDAAWTADFGAVREQAKEATALKGTLGNSAAALINGIKAVLAVFRRFEKVYVYSSLK
SDQDTGNATYQAMNAKAESLGAELASQLAFLDPEILAIPADKLAAWRDTESLKPFGHFIDAITVNRQHVLTAAAEALIAS
AGNALNASHATFNVLDNSDLQFGFVENEDGETVQLSNGLYGQLIRSTQRKLRKEAFETLLRAYESMKNTFAQTLSGQVKA
HNFNAKAHHYANARAAAMASNHIPESVYTTLIDQVNTHLPLLHRYVALRKKVLGVDQLHMYDIYTPLTGKPPLTFTLDQA
KAEALKALAPLGDDYLSHVREIFDNRYIDVVENKGKRSGAYSGGSYDTNPFILLNWHDAVDELYTLIHETGHSVHSWYTR
HNQPYVYGDYPIFVAEIASTTNENLLTDYFLTHTDDPKVRAYILNYYLDGFKGTVFRQTQFTEFEHWIHQQDQQGEPLTA
TSMATYYADLNARYYGPDVARDPEIAFEWARIPHFYYNYYVYQYATGFAAASTLAAGISSGEPNAASRYLDYLKSGSSQY
AIDTMKTAGVDMTKPDYLEAAFSMFEKRLTELEELLQKG

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=65323 LBCZ_RS00940 WP_039639682.1 193132..194931(-) (pepF) [Lacticaseibacillus casei DSM 20011 = JCM 1134 = ATCC 393]
ATGCAACATTTACCGGTACGTGAAGATGTTCCAACCAAGCTGACATGGGATCTAACCACCATTTATCCAAATGATGCGGC
GTGGACAGCCGACTTTGGAGCTGTTCGCGAGCAGGCCAAAGAGGCGACTGCGCTCAAGGGAACGTTAGGCAATTCAGCCG
CTGCGCTCATCAACGGCATCAAGGCGGTTTTAGCGGTCTTTCGGCGGTTTGAGAAAGTTTATGTTTATTCAAGTCTGAAA
AGCGACCAGGATACTGGCAACGCCACTTATCAGGCGATGAATGCCAAGGCTGAAAGTCTCGGCGCCGAGCTGGCCAGTCA
GTTAGCCTTTTTGGATCCGGAGATTCTGGCAATTCCCGCGGACAAATTGGCAGCATGGCGCGACACTGAAAGTCTTAAGC
CGTTTGGGCATTTTATCGATGCGATCACCGTCAATCGCCAACATGTGCTGACAGCCGCAGCGGAAGCTCTGATTGCCAGT
GCCGGTAATGCGCTGAACGCCAGTCATGCCACTTTCAACGTCCTAGACAACTCCGACCTGCAATTCGGTTTTGTCGAAAA
TGAAGACGGCGAAACAGTGCAGCTCAGTAACGGCTTGTACGGCCAGCTGATTCGCTCAACCCAGCGAAAATTGCGCAAAG
AAGCCTTTGAAACGTTACTGCGTGCTTACGAAAGCATGAAGAACACGTTTGCCCAAACCCTGAGCGGCCAGGTCAAGGCG
CACAATTTCAATGCCAAAGCCCATCATTACGCTAATGCCCGCGCGGCGGCAATGGCAAGCAACCACATTCCGGAAAGTGT
TTATACGACCCTTATCGATCAAGTCAACACCCATTTACCCCTTCTGCATCGCTATGTCGCATTGCGGAAAAAAGTCTTGG
GCGTCGATCAACTACACATGTATGACATTTACACCCCGTTGACTGGCAAGCCGCCGTTGACGTTCACGCTTGATCAGGCA
AAAGCCGAGGCATTAAAGGCTTTGGCGCCGCTTGGTGATGATTATCTCAGCCATGTCCGGGAAATCTTCGACAATCGTTA
CATTGATGTCGTCGAAAATAAAGGCAAACGCTCCGGTGCTTATTCAGGCGGGTCTTACGATACGAATCCGTTTATTTTGC
TGAACTGGCATGACGCGGTGGATGAGCTTTATACTTTGATTCACGAAACCGGCCACAGCGTTCACAGCTGGTACACGCGT
CACAACCAGCCTTATGTGTATGGGGACTATCCGATTTTTGTTGCCGAAATTGCTTCGACTACCAACGAAAATCTGCTCAC
CGATTACTTCCTCACCCACACGGATGACCCCAAGGTACGCGCCTACATCCTGAATTACTATCTCGATGGCTTCAAAGGCA
CTGTTTTTCGCCAAACCCAATTTACCGAATTTGAGCACTGGATTCATCAGCAGGACCAACAAGGCGAACCGCTCACGGCA
ACTAGTATGGCGACTTACTATGCCGATCTCAATGCCCGGTATTATGGACCGGATGTTGCCCGCGATCCCGAAATTGCATT
CGAATGGGCACGAATTCCACATTTCTATTACAATTATTATGTCTATCAGTATGCAACCGGATTTGCCGCAGCATCAACGC
TAGCCGCTGGTATTAGCAGCGGCGAACCCAACGCCGCATCCCGCTACTTGGACTATTTAAAGTCAGGTAGCTCGCAATAC
GCCATCGATACCATGAAAACCGCTGGTGTCGATATGACCAAACCGGACTATCTGGAAGCGGCATTTTCGATGTTTGAAAA
GCGTTTAACGGAATTGGAAGAACTTTTACAGAAAGGATGA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(114-182)

Peptidase family M3 (Peptidase_M3)

(203-582)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.357

99.165

0.519

Multiple sequence alignment