Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   L6L65_RS08870 Genome accession   NZ_CP091691
Coordinates   1802116..1802745 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain KMi006     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1797116..1807745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6L65_RS08855 (L6L65_08850) helD 1797358..1799412 (-) 2055 WP_001295354.1 DNA helicase IV -
  L6L65_RS08860 (L6L65_08855) yccF 1799535..1799981 (+) 447 WP_001261235.1 YccF domain-containing protein -
  L6L65_RS08865 (L6L65_08860) yccS 1799991..1802153 (+) 2163 WP_000875058.1 YccS family putative transporter -
  L6L65_RS08870 (L6L65_08865) sxy/tfoX 1802116..1802745 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  L6L65_RS08875 (L6L65_08870) sulA 1802964..1803473 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  L6L65_RS08880 (L6L65_08875) ompA 1803830..1804870 (+) 1041 WP_000750416.1 porin OmpA -
  L6L65_RS08885 (L6L65_08880) matP 1804946..1805398 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  L6L65_RS08890 (L6L65_08885) ycbZ 1805584..1807344 (+) 1761 WP_000152888.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=653228 L6L65_RS08870 WP_000839153.1 1802116..1802745(-) (sxy/tfoX) [Escherichia coli strain KMi006]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=653228 L6L65_RS08870 WP_000839153.1 1802116..1802745(-) (sxy/tfoX) [Escherichia coli strain KMi006]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1