Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   L6L54_RS08040 Genome accession   NZ_CP091682
Coordinates   1691742..1692371 (+) Length   209 a.a.
NCBI ID   WP_000839136.1    Uniprot ID   A0A0D8W3X3
Organism   Escherichia coli strain KKo003     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1686742..1697371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6L54_RS08020 (L6L54_08020) ycbZ 1687142..1688902 (-) 1761 WP_000156498.1 Lon protease family protein -
  L6L54_RS08025 (L6L54_08025) matP 1689088..1689540 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  L6L54_RS08030 (L6L54_08030) ompA 1689618..1690658 (-) 1041 WP_001313715.1 porin OmpA -
  L6L54_RS08035 (L6L54_08035) sulA 1691014..1691523 (-) 510 WP_000288723.1 SOS-induced cell division inhibitor SulA -
  L6L54_RS08040 (L6L54_08040) sxy/tfoX 1691742..1692371 (+) 630 WP_000839136.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  L6L54_RS08045 (L6L54_08045) yccS 1692334..1694496 (-) 2163 WP_000875041.1 YccS family putative transporter -
  L6L54_RS08050 (L6L54_08050) yccF 1694506..1694952 (-) 447 WP_001261236.1 YccF domain-containing protein -
  L6L54_RS08055 (L6L54_08055) helD 1695075..1697129 (+) 2055 WP_001538528.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.06 Da        Isoelectric Point: 9.2180

>NTDB_id=653205 L6L54_RS08040 WP_000839136.1 1691742..1692371(+) (sxy/tfoX) [Escherichia coli strain KKo003]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=653205 L6L54_RS08040 WP_000839136.1 1691742..1692371(+) (sxy/tfoX) [Escherichia coli strain KKo003]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTAACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D8W3X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99