Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OHT77_RS19850 Genome accession   NZ_CP108087
Coordinates   4578156..4579154 (-) Length   332 a.a.
NCBI ID   WP_328829870.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00252     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4573156..4584154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT77_RS19835 (OHT77_19830) - 4574411..4575964 (-) 1554 WP_328829868.1 MFS transporter -
  OHT77_RS19840 (OHT77_19835) - 4576119..4577090 (+) 972 WP_328829869.1 YafY family protein -
  OHT77_RS19845 (OHT77_19840) - 4577098..4577724 (-) 627 WP_328834283.1 helix-turn-helix domain-containing protein -
  OHT77_RS19850 (OHT77_19845) rpoS 4578156..4579154 (-) 999 WP_328829870.1 sigma-70 family RNA polymerase sigma factor Regulator
  OHT77_RS19855 (OHT77_19850) - 4579356..4579886 (+) 531 WP_328829871.1 N-acetyltransferase family protein -
  OHT77_RS19860 (OHT77_19855) - 4579927..4580730 (-) 804 WP_328829872.1 class III extradiol ring-cleavage dioxygenase -
  OHT77_RS19865 (OHT77_19860) - 4580841..4581353 (+) 513 WP_328829874.1 MarR family transcriptional regulator -
  OHT77_RS19870 (OHT77_19865) - 4581465..4583027 (-) 1563 WP_328829875.1 MFS transporter -
  OHT77_RS19875 (OHT77_19870) - 4583179..4583823 (-) 645 WP_266771369.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37206.91 Da        Isoelectric Point: 5.2586

>NTDB_id=653190 OHT77_RS19850 WP_328829870.1 4578156..4579154(-) (rpoS) [Streptomyces sp. NBC_00252]
MATRAVARRKSATGETSDAARSVRAHGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVFARQVLEGEEKSQAD
ASRAELEALVAEGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNRKNGREPEHAEIAAELDSTPERVTDVLDWARDPVSLNMSVDDDGDTQF
GDLLEDTSAVSPEQSVMTLLRSEELDDLIGRLDQRTASIIKMRYGIEDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLASQTGFDAAA

Nucleotide


Download         Length: 999 bp        

>NTDB_id=653190 OHT77_RS19850 WP_328829870.1 4578156..4579154(-) (rpoS) [Streptomyces sp. NBC_00252]
ATGGCAACCCGTGCCGTCGCCCGTCGTAAGTCCGCCACCGGCGAGACCTCCGACGCGGCACGCAGTGTTCGCGCCCATGG
CGGCGAGATCGCCGACCGCGACCTGGTCGGCATGTATCTCGACGAAATCGCGCGTACACCGCTGCTCGACGCCGCAAAGG
AAGTCGAGCTTTCGCAGACCATCGAAGCGGGCGTGTTCGCGCGCCAGGTTCTCGAGGGCGAGGAGAAGTCCCAGGCGGAC
GCCTCCCGCGCCGAGCTCGAGGCCCTGGTCGCCGAAGGGGAGCGTGCCAAGGACGTCTTCATCCGTTCCAACCTCCGCCT
GGTCGTGGCCGTGGCCCGCCGTTACCCCCGTAGCGGCCTGCCCCTCCTCGACCTGATCCAGGAGGGCAACGCGGGCCTGG
TCCGCGCCGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCGACCTGGTGGATCCGCCAGGCCATC
ACCCGCTCCATCGCCGACCAGTCCCGGACCATCCGGCTCCCCGTCCACCTGGTGGAGGAGCTGGGCCGCATCCGCCGAGT
GCAGCGCGAGTTCAACCGGAAGAACGGCCGGGAGCCCGAGCACGCGGAGATCGCCGCGGAGCTGGACTCGACGCCGGAGC
GCGTGACCGACGTGCTCGACTGGGCCCGTGACCCGGTCTCGCTGAACATGTCGGTGGACGACGACGGCGACACCCAGTTC
GGCGACCTCCTGGAGGACACCTCCGCGGTCTCGCCCGAGCAGTCCGTCATGACCCTGCTGCGCAGCGAGGAGCTGGACGA
TCTGATCGGCCGGCTCGACCAGCGCACGGCGTCCATCATCAAGATGCGGTACGGCATCGAGGACGGCCGTGAGCGGACGC
TGACGGAGGTCGGCAAAGAGCACGGGCTGACGCGGGAGCGGATCCGGCAGATCGAGAAGCACGCGTTGCTGGAGCTGAAG
AAGCTGGCGAGCCAGACCGGGTTCGACGCGGCGGCGTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(100-169)

Sigma-70, region 4 (Sigma70_r4)

(269-321)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(34-67)

Sigma-70 region 3 (Sigma70_r3)

(179-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.468

90.06

0.364