Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHT77_RS16780 Genome accession   NZ_CP108087
Coordinates   3900327..3900941 (-) Length   204 a.a.
NCBI ID   WP_328829278.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00252     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3895327..3905941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT77_RS16755 (OHT77_16750) - 3896135..3896587 (+) 453 WP_266772198.1 ATP-binding protein -
  OHT77_RS16760 (OHT77_16755) - 3896645..3897739 (-) 1095 WP_328829275.1 bifunctional succinyldiaminopimelate transaminase/glutamate-prephenate aminotransferase -
  OHT77_RS16765 (OHT77_16760) fdxA 3897898..3898218 (-) 321 WP_019058397.1 ferredoxin -
  OHT77_RS16770 (OHT77_16765) - 3898359..3899354 (+) 996 WP_328829276.1 GNAT family N-acetyltransferase -
  OHT77_RS16775 (OHT77_16770) - 3899351..3900217 (+) 867 WP_328829277.1 transglutaminase-like domain-containing protein -
  OHT77_RS16780 (OHT77_16775) vraR 3900327..3900941 (-) 615 WP_328829278.1 response regulator transcription factor Regulator
  OHT77_RS16785 (OHT77_16780) - 3900938..3902137 (-) 1200 WP_328834260.1 histidine kinase -
  OHT77_RS16790 (OHT77_16785) - 3902143..3902883 (-) 741 WP_328829279.1 ABC transporter permease -
  OHT77_RS16795 (OHT77_16790) - 3902880..3903806 (-) 927 WP_266772186.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 21486.75 Da        Isoelectric Point: 6.1157

>NTDB_id=653182 OHT77_RS16780 WP_328829278.1 3900327..3900941(-) (vraR) [Streptomyces sp. NBC_00252]
MSRTIKVLLAEDQSMVREALAALLGLEDDIEVVAQVARGDEVLAAARHHTVDVALLDIEMPGCTGIEAAAQVHKALPGVK
LVVLTTFGRPGYLRSAMEAGADAFLVKDAPAAQLAAAVRKVLAGERVIDPTLAAAALAEGANPLTDREREVLRAAADGST
NAELATALHLSQGTVRNYLSTAIQKLAVRNRAEAVRIAREKGWL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=653182 OHT77_RS16780 WP_328829278.1 3900327..3900941(-) (vraR) [Streptomyces sp. NBC_00252]
ATGAGCCGTACGATCAAGGTCCTCCTCGCCGAGGACCAGTCGATGGTCCGCGAGGCACTGGCCGCCCTGCTCGGCCTGGA
GGACGACATCGAGGTCGTCGCCCAAGTCGCCCGCGGCGACGAGGTGTTGGCAGCGGCACGGCACCACACCGTGGACGTGG
CCCTCCTCGACATCGAAATGCCCGGCTGCACCGGCATCGAGGCGGCGGCCCAGGTCCACAAGGCGCTCCCCGGGGTGAAG
CTGGTCGTCCTGACGACCTTCGGCCGCCCCGGCTACCTCCGCAGCGCGATGGAGGCGGGAGCGGACGCCTTCCTCGTGAA
GGACGCCCCGGCGGCCCAACTGGCGGCAGCGGTACGGAAGGTACTCGCCGGGGAGCGGGTCATCGACCCCACCTTGGCCG
CGGCGGCCCTGGCGGAGGGCGCCAACCCGCTGACCGACCGCGAACGGGAAGTACTCCGGGCGGCGGCGGACGGCTCGACG
AACGCGGAACTGGCAACGGCCCTCCACCTGTCCCAGGGCACGGTCCGCAACTACCTGTCGACAGCGATCCAGAAGCTGGC
GGTACGGAACAGGGCAGAGGCGGTAAGGATCGCAAGGGAAAAAGGCTGGCTGTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(143-198)

Response regulator receiver domain (Response_reg)

(7-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.232

100

0.368