Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHT77_RS12110 Genome accession   NZ_CP108087
Coordinates   2848624..2849403 (+) Length   259 a.a.
NCBI ID   WP_026151025.1    Uniprot ID   A0ABU4FGW0
Organism   Streptomyces sp. NBC_00252     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2843624..2854403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT77_RS12100 (OHT77_12085) - 2844447..2847341 (-) 2895 WP_328828294.1 vitamin B12-dependent ribonucleotide reductase -
  OHT77_RS12105 (OHT77_12090) nrdR 2847507..2848058 (-) 552 WP_266776797.1 transcriptional regulator NrdR -
  OHT77_RS12110 (OHT77_12095) dinR/lexA 2848624..2849403 (+) 780 WP_026151025.1 transcriptional repressor LexA Regulator
  OHT77_RS12115 (OHT77_12100) - 2849543..2851567 (-) 2025 WP_328828296.1 ATP-dependent DNA helicase -
  OHT77_RS12120 (OHT77_12105) - 2851964..2852692 (-) 729 WP_328834220.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28037.72 Da        Isoelectric Point: 7.0668

>NTDB_id=653170 OHT77_RS12110 WP_026151025.1 2848624..2849403(+) (dinR/lexA) [Streptomyces sp. NBC_00252]
MTTTADSATITAQDRSQGRLEPVHAMNEAANPEGHKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQSSSVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLEGEATVKRFKREDGHVWLLPHNSAYEP
IPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=653170 OHT77_RS12110 WP_026151025.1 2848624..2849403(+) (dinR/lexA) [Streptomyces sp. NBC_00252]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGATCGCTCCCAGGGCCGACTCGAGCCGGTGCATGCAATGAA
CGAAGCCGCGAATCCCGAGGGACACAAGCGCTCCCTACCGGGCCGACCTCCCGGTATCCGGGCGGACAGCTCGGGGCTCA
CGGACCGGCAGCGCCGGGTGATCGAGGTCATCAGGGACTCGGTGCAGCGGCGGGGATACCCGCCGTCGATGCGCGAGATC
GGCCAGGCCGTGGGCCTGTCCAGCACATCCTCGGTCGCACACCAGCTGATGGCACTGGAGCGCAAGGGCTTCCTGCGCCG
CGACCCGCACCGCCCGCGCGCGTACGAGGTCCGCGGTTCGGACCAGTCCTCGTCGGTGCAGCCCACGGACACCGCGGGCA
AGCCCGCCGCGTCGTACGTCCCTCTGGTGGGCCGGATCGCCGCCGGTGGCCCGATCCTCGCCGAGGAGTCGGTCGAGGAC
GTCTTCCCCCTCCCCCGCCAACTGGTCGGTGACGGTGAGCTGTTCGTCCTGAAGGTCGTCGGTGACTCGATGATCGAGGC
CGCGATCTGCGACGGCGACTGGGTCACCGTGCGCCGCCAGCCGGTCGCCGAGAACGGCGACATCGTCGCCGCCATGCTCG
AGGGCGAGGCCACCGTCAAGCGCTTCAAGCGCGAGGACGGCCACGTCTGGCTCCTCCCGCACAACTCGGCCTACGAGCCG
ATCCCCGGCGACGACGCGACGATCCTCGGCAAGGTGGTGGCAGTGCTGCGGCGCGTGTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(51-114)

Peptidase S24-like (Peptidase_S24)

(141-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.972

81.467

0.375