Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   L6L68_RS08785 Genome accession   NZ_CP091673
Coordinates   1612742..1613371 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain KKo009     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1607742..1618371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6L68_RS08765 (L6L68_08765) ycbZ 1608143..1609903 (-) 1761 WP_000156476.1 Lon protease family protein -
  L6L68_RS08770 (L6L68_08770) matP 1610089..1610541 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  L6L68_RS08775 (L6L68_08775) ompA 1610617..1611657 (-) 1041 WP_001314606.1 porin OmpA -
  L6L68_RS08780 (L6L68_08780) sulA 1612014..1612523 (-) 510 WP_000288705.1 SOS-induced cell division inhibitor SulA -
  L6L68_RS08785 (L6L68_08785) sxy/tfoX 1612742..1613371 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  L6L68_RS08790 (L6L68_08790) yccS 1613334..1615496 (-) 2163 WP_000875041.1 YccS family putative transporter -
  L6L68_RS08795 (L6L68_08795) yccF 1615506..1615952 (-) 447 WP_001261236.1 YccF domain-containing protein -
  L6L68_RS08800 (L6L68_08800) helD 1616075..1618129 (+) 2055 WP_001317751.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=653161 L6L68_RS08785 WP_000839153.1 1612742..1613371(+) (sxy/tfoX) [Escherichia coli strain KKo009]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=653161 L6L68_RS08785 WP_000839153.1 1612742..1613371(+) (sxy/tfoX) [Escherichia coli strain KKo009]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCTGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1