Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   L6L58_RS09995 Genome accession   NZ_CP091665
Coordinates   2121902..2122531 (+) Length   209 a.a.
NCBI ID   WP_000839133.1    Uniprot ID   A0A1M2IUY6
Organism   Escherichia coli strain KOr019     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2116902..2127531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6L58_RS09975 (L6L58_09970) ycbZ 2117290..2119050 (-) 1761 WP_000156477.1 Lon protease family protein -
  L6L58_RS09980 (L6L58_09975) matP 2119236..2119688 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  L6L58_RS09985 (L6L58_09980) ompA 2119766..2120818 (-) 1053 WP_001346420.1 porin OmpA -
  L6L58_RS09990 (L6L58_09985) sulA 2121175..2121684 (-) 510 WP_000288691.1 SOS-induced cell division inhibitor SulA -
  L6L58_RS09995 (L6L58_09990) sxy/tfoX 2121902..2122531 (+) 630 WP_000839133.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  L6L58_RS10000 (L6L58_09995) yccS 2122494..2124656 (-) 2163 WP_000875039.1 YccS family putative transporter -
  L6L58_RS10005 (L6L58_10000) yccF 2124666..2125112 (-) 447 WP_001261235.1 YccF domain-containing protein -
  L6L58_RS10010 (L6L58_10005) helD 2125235..2127289 (+) 2055 WP_001361412.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24161.04 Da        Isoelectric Point: 9.2180

>NTDB_id=653145 L6L58_RS09995 WP_000839133.1 2121902..2122531(+) (sxy/tfoX) [Escherichia coli strain KOr019]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTIDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=653145 L6L58_RS09995 WP_000839133.1 2121902..2122531(+) (sxy/tfoX) [Escherichia coli strain KOr019]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCATTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAC
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTAGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1M2IUY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995