Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   OHU11_RS22495 Genome accession   NZ_CP108082
Coordinates   5025568..5026698 (+) Length   376 a.a.
NCBI ID   WP_266689827.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00257     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5020568..5031698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU11_RS22485 (OHU11_22465) dnaN 5023309..5024439 (+) 1131 WP_072487582.1 DNA polymerase III subunit beta -
  OHU11_RS22490 (OHU11_22470) gnd 5024605..5025483 (+) 879 WP_124719870.1 decarboxylating 6-phosphogluconate dehydrogenase -
  OHU11_RS22495 (OHU11_22475) recF 5025568..5026698 (+) 1131 WP_266689827.1 DNA replication/repair protein RecF Machinery gene
  OHU11_RS22500 (OHU11_22480) - 5026695..5027267 (+) 573 WP_266689828.1 DciA family protein -
  OHU11_RS22505 (OHU11_22485) gyrB 5027681..5029786 (+) 2106 WP_323180410.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 40869.54 Da        Isoelectric Point: 6.8623

>NTDB_id=653115 OHU11_RS22495 WP_266689827.1 5025568..5026698(+) (recF) [Streptomyces sp. NBC_00257]
MHVTHLSLADFRSYARVEVPLEPGVTAFVGANGQGKTNLVEAVGYLATLGSHRVSSDAPLVRMGADRAVIRAAVTQGERS
QLIELELNPGRANRARINRSSQVRPRDVLGIVRTVLFAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYERVLKQ
RNTLLKSAAMARRHGGRSMDLSTLDVWDQHLGRVGAELLAQRLDLIATLQPLADKAYADVAPGGGPLALEYRSSVGAGVE
SARTREELYEQLIAALAEVRKQEIERGVTLVGPHRDDLLLGLRGMPAKGYASHGESWSYALALRLASYDLLRSEGNEPVL
VLDDVFAELDARRRERLAELVAPGEQVLVTAAVDDDVPGVLAGTRFAVSAGEVERL

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=653115 OHU11_RS22495 WP_266689827.1 5025568..5026698(+) (recF) [Streptomyces sp. NBC_00257]
ATGCATGTCACGCATCTCTCGCTGGCCGACTTCCGCTCGTACGCCCGGGTCGAGGTACCTCTCGAACCGGGCGTCACCGC
GTTCGTGGGGGCCAACGGCCAGGGCAAGACGAATCTGGTCGAGGCGGTCGGCTATCTCGCGACGCTCGGCAGCCACCGGG
TCTCCTCCGACGCGCCGCTGGTGCGGATGGGCGCCGACCGGGCCGTGATCCGTGCCGCCGTGACGCAGGGGGAGCGTTCG
CAGCTGATCGAGCTGGAGCTCAATCCCGGCAGGGCCAACCGGGCCCGTATCAATAGATCGTCGCAGGTCAGGCCCCGTGA
CGTGCTGGGGATAGTACGTACGGTGCTGTTCGCGCCGGAGGACCTGGCGCTGGTCAAGGGCGACCCCGGGGAGCGCCGAC
GCTTCCTCGACGAGCTGATCACGGCCCGTTCGCCGCGGATGGCCGGGGTGCGCTCGGACTACGAGCGGGTGCTGAAGCAG
CGCAACACCCTGCTGAAGTCGGCGGCGATGGCGCGTCGGCACGGCGGCCGGTCGATGGATCTGTCCACGCTCGACGTGTG
GGACCAGCACCTGGGCCGGGTGGGCGCGGAGCTGCTGGCGCAGCGGCTGGATCTGATCGCCACCCTTCAGCCGCTGGCGG
ACAAGGCGTACGCGGATGTCGCGCCGGGCGGTGGCCCGCTGGCGCTGGAGTACCGCAGCTCGGTCGGGGCGGGCGTGGAG
TCCGCGCGTACCCGTGAGGAGCTGTACGAGCAGCTGATCGCCGCCCTCGCGGAGGTCCGCAAGCAGGAGATCGAGCGGGG
CGTGACGCTGGTCGGGCCGCACCGCGACGATCTGCTGCTGGGGCTGCGGGGCATGCCGGCCAAGGGGTACGCGAGCCATG
GCGAGTCCTGGTCGTACGCGCTGGCGCTGCGGCTGGCCTCGTACGATCTGCTGCGCAGCGAGGGCAACGAGCCGGTGCTG
GTGCTGGACGACGTCTTCGCGGAGCTGGACGCCCGGCGCCGGGAGCGGCTGGCGGAGCTGGTGGCCCCCGGCGAACAGGT
GCTCGTGACGGCCGCGGTGGACGACGACGTTCCGGGGGTGCTGGCGGGGACCCGGTTCGCGGTGTCCGCGGGTGAGGTGG
AGCGGCTGTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.202

94.681

0.362