Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHU11_RS12585 Genome accession   NZ_CP108082
Coordinates   2828959..2829753 (+) Length   264 a.a.
NCBI ID   WP_266688214.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00257     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2823959..2834753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU11_RS12570 (OHU11_12545) - 2824249..2824692 (-) 444 WP_266688212.1 helix-turn-helix transcriptional regulator -
  OHU11_RS12575 (OHU11_12550) - 2824871..2827765 (-) 2895 WP_266688213.1 vitamin B12-dependent ribonucleotide reductase -
  OHU11_RS12580 (OHU11_12555) nrdR 2827926..2828438 (-) 513 WP_124720949.1 transcriptional regulator NrdR -
  OHU11_RS12585 (OHU11_12560) dinR/lexA 2828959..2829753 (+) 795 WP_266688214.1 transcriptional repressor LexA Regulator
  OHU11_RS12590 (OHU11_12565) - 2829855..2831825 (-) 1971 WP_266688215.1 ATP-dependent DNA helicase -
  OHU11_RS12595 (OHU11_12570) - 2831863..2833752 (-) 1890 WP_266688216.1 IucA/IucC family siderophore biosynthesis protein -
  OHU11_RS12600 (OHU11_12575) - 2833813..2834637 (-) 825 WP_266769023.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28702.49 Da        Isoelectric Point: 6.9854

>NTDB_id=653089 OHU11_RS12585 WP_266688214.1 2828959..2829753(+) (dinR/lexA) [Streptomyces sp. NBC_00257]
MTTTADSAIITAQDRSQSRFEPVHAMNDSVTNMEGPEPTRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHN
SAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=653089 OHU11_RS12585 WP_266688214.1 2828959..2829753(+) (dinR/lexA) [Streptomyces sp. NBC_00257]
GTGACCACCACCGCAGACAGTGCCATCATCACTGCCCAGGACCGCTCCCAGAGCCGATTCGAGCCGGTGCATGCCATGAA
TGACTCAGTCACGAACATGGAGGGGCCAGAGCCCACGCGCCCAGCGCGCTCATTGCCCGGTCGACCTCCTGGAATCCGGG
CGGACAGCTCGGGGCTCACGGACCGGCAGCGGCGAGTGATCGAGGTGATCCGGGATTCCGTGCAACGGCGTGGATACCCG
CCCTCGATGCGGGAGATCGGTCAGGCGGTGGGCCTGTCCAGCACGTCCTCCGTCGCCCATCAGCTGATGGCCCTGGAGCG
CAAGGGGTTCCTGCGCCGCGACCCGCACCGCCCGCGGGCGTACGAGGTCCGAGGTTCGGACCAGCCCAGCTCGCAGCCCA
CCGACACGACCGGCAAGCCCGCTGCGTCGTACGTGCCGCTGGTCGGCCGGATCGCCGCCGGTGGCCCGATCCTCGCCGAG
GAGTCGGTCGAGGATGTCTTCCCGCTCCCCCGCCAGCTCGTCGGTGACGGCGAGCTGTTCGTGCTCAAGGTCGTCGGTGA
CTCGATGATCGAGGCGGCGATCTGCGACGGCGACTGGGTCACAGTGCGCCGCCAGCCCGTCGCGGAGAACGGCGACATCG
TGGCGGCCATGCTGGACGGCGAGGCCACGGTCAAGCGCTTCAAGCGGGAGGACGGCCATGTCTGGCTGCTCCCGCACAAC
TCCGCGTACCAGCCGATCCCGGGCGACGAGGCGACGATCCTCGGCAAGGTGGTGGCGGTGCTGCGGCGAGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.698

80.303

0.375