Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   L6L61_RS01970 Genome accession   NZ_CP091659
Coordinates   204104..204733 (-) Length   209 a.a.
NCBI ID   WP_000839152.1    Uniprot ID   -
Organism   Escherichia coli strain KFu024     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 199104..209733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6L61_RS01955 (L6L61_01955) helD 199346..201400 (-) 2055 WP_033554506.1 DNA helicase IV -
  L6L61_RS01960 (L6L61_01960) yccF 201523..201969 (+) 447 WP_001261235.1 YccF domain-containing protein -
  L6L61_RS01965 (L6L61_01965) yccS 201979..204141 (+) 2163 WP_023281787.1 YccS family putative transporter -
  L6L61_RS01970 (L6L61_01970) sxy/tfoX 204104..204733 (-) 630 WP_000839152.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  L6L61_RS01975 (L6L61_01975) sulA 204952..205461 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  L6L61_RS01980 (L6L61_01980) ompA 205818..206858 (+) 1041 WP_000750416.1 porin OmpA -
  L6L61_RS01985 (L6L61_01985) matP 206934..207386 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  L6L61_RS01990 (L6L61_01990) ycbZ 207572..209332 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24093.97 Da        Isoelectric Point: 8.8133

>NTDB_id=653069 L6L61_RS01970 WP_000839152.1 204104..204733(-) (sxy/tfoX) [Escherichia coli strain KFu024]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVACRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=653069 L6L61_RS01970 WP_000839152.1 204104..204733(-) (sxy/tfoX) [Escherichia coli strain KFu024]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCATG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995