Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG718_RS36555 Genome accession   NZ_CP108081
Coordinates   8189773..8191506 (-) Length   577 a.a.
NCBI ID   WP_328846218.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00258     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 8184773..8196506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG718_RS36545 (OG718_36530) - 8186367..8187653 (+) 1287 WP_306940248.1 RNA polymerase sigma factor -
  OG718_RS36550 (OG718_36535) rcrQ 8187845..8189773 (-) 1929 WP_328846217.1 ABC transporter ATP-binding protein Regulator
  OG718_RS36555 (OG718_36540) rcrP 8189773..8191506 (-) 1734 WP_328846218.1 ABC transporter ATP-binding protein Regulator
  OG718_RS36560 (OG718_36545) - 8191674..8193128 (-) 1455 WP_143631835.1 FGGY family carbohydrate kinase -
  OG718_RS36565 (OG718_36550) - 8193192..8193500 (-) 309 WP_143631832.1 YtxH domain-containing protein -
  OG718_RS36585 (OG718_36570) - 8194298..8195110 (-) 813 WP_328846219.1 LLM class flavin-dependent oxidoreductase -
  OG718_RS36590 (OG718_36575) - 8195107..8195958 (-) 852 WP_143631827.1 alpha/beta fold hydrolase -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62653.84 Da        Isoelectric Point: 6.1939

>NTDB_id=653036 OG718_RS36555 WP_328846218.1 8189773..8191506(-) (rcrP) [Streptomyces sp. NBC_00258]
MLIRLLRTYLTPYKKPIALLVLLQFLQTCATLYLPTLNADIIDNGVVDGDTGYILTFGALMIGISLAQVVCNIGAVYYGA
RTASAVGRDIRAGIFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLTLMTFTLLVSAPIMCVGGIVLALGLDVPLSGV
LLAVVPVLGISVSLIVRRLRPLFRTMQVRLDTVNRVLREQITGNRVIRAFVRDGYEEERFRKANADLTEVSLGTGRMLAL
MFPIVMTVVNVSSIAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTSSSVVP
PKAPVLELRRHGHLEIRGAGFRYPGAEEPVLRTIDLVALPGETTAVIGSTGSGKSTLLGLVPRLFDATDGQVLVDGVDVR
TVEPRLLARTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKGFVEGLENGLDATIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRRALAQETAEATVVIVAQRVSTIRDADRIVVLDEGRVVGTGRHHELMAEN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=653036 OG718_RS36555 WP_328846218.1 8189773..8191506(-) (rcrP) [Streptomyces sp. NBC_00258]
GTGCTCATACGACTCCTGCGTACCTATCTCACGCCCTACAAGAAACCCATCGCGCTGCTCGTACTGCTGCAGTTCCTGCA
GACCTGCGCCACGCTCTACCTGCCCACGCTGAACGCGGACATCATCGACAACGGTGTCGTCGACGGCGACACGGGCTACA
TCCTGACCTTCGGCGCCCTGATGATCGGCATCTCGCTGGCCCAGGTCGTCTGCAACATCGGGGCCGTCTACTACGGCGCC
CGTACGGCCTCCGCGGTCGGCCGGGACATCCGGGCCGGCATCTTCGACCGGGTGCAGTCGTTCTCCGCGCGTGAGGTCGG
CCACTTCGGGGCGCCGTCGCTGATCACCCGCACGACGAACGACGTGCAGCAGGTGCAGATGCTCACCCTGATGACGTTCA
CGCTGCTGGTGTCGGCGCCGATCATGTGCGTGGGCGGCATCGTCCTCGCGCTCGGGCTCGACGTACCGCTGTCCGGGGTG
CTGCTCGCCGTCGTGCCGGTGCTCGGGATCTCGGTGAGTCTCATCGTGCGCCGGCTGCGGCCGCTGTTCCGCACGATGCA
GGTGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGGGCCTTCGTGCGCGACG
GCTACGAGGAGGAGCGTTTCCGGAAGGCGAACGCCGACCTCACCGAGGTGTCGCTGGGCACCGGGCGGATGCTGGCGCTG
ATGTTCCCCATCGTCATGACGGTGGTGAACGTGTCGTCGATCGCGGTGGTGTGGTTCGGCGCCCACCGGATCGACAGCGG
CGGGATGCAGATCGGCGCGCTGACCGCGTTCCTCGCCTACCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGTGCCGAGCGCATCCAGGAGGTCCTGGACACCTCCAGCAGTGTGGTCCCG
CCGAAGGCACCGGTCCTGGAGCTGCGGCGGCACGGCCATCTGGAGATCCGGGGTGCCGGGTTCCGCTACCCGGGTGCCGA
GGAGCCGGTACTGAGGACCATCGACCTGGTGGCCCTGCCGGGTGAGACCACCGCCGTGATCGGCTCGACCGGCAGCGGCA
AGTCCACGCTCCTCGGCCTGGTCCCCCGGCTGTTCGACGCCACCGACGGCCAGGTGCTGGTGGACGGCGTCGACGTACGC
ACGGTCGAGCCGCGGCTGCTCGCGCGCACGGTGGGCCTCGTACCGCAGAAGCCGTACCTCTTCGCGGGCACGGTGGCGAC
CAACCTCCGGTACGGCAATCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGCTTCG
TGGAGGGTCTGGAGAACGGTCTCGACGCGACGATCGCGCAGGGCGGGACGAATGTGTCGGGCGGCCAGCGGCAGCGGCTC
GCCATCGCCCGGACCCTTGTGCAGCGCCCCGAGATCTACCTCTTCGACGACTCCTTCTCGGCGCTCGACTACGCCACGGA
CGCGGCGTTGCGGAGGGCGCTCGCGCAGGAGACCGCCGAGGCGACGGTCGTGATCGTCGCCCAGCGGGTGTCGACCATCC
GTGACGCCGACCGGATCGTGGTCCTCGACGAGGGCCGGGTCGTCGGCACGGGCCGCCACCACGAGCTGATGGCGGAGAAC
GAGACATACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCAGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(353-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.59

93.934

0.381