Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG718_RS36550 Genome accession   NZ_CP108081
Coordinates   8187845..8189773 (-) Length   642 a.a.
NCBI ID   WP_328846217.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00258     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 8182845..8194773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG718_RS36540 (OG718_36525) dnaG 8184073..8185980 (+) 1908 WP_143631846.1 DNA primase -
  OG718_RS36545 (OG718_36530) - 8186367..8187653 (+) 1287 WP_306940248.1 RNA polymerase sigma factor -
  OG718_RS36550 (OG718_36535) rcrQ 8187845..8189773 (-) 1929 WP_328846217.1 ABC transporter ATP-binding protein Regulator
  OG718_RS36555 (OG718_36540) rcrP 8189773..8191506 (-) 1734 WP_328846218.1 ABC transporter ATP-binding protein Regulator
  OG718_RS36560 (OG718_36545) - 8191674..8193128 (-) 1455 WP_143631835.1 FGGY family carbohydrate kinase -
  OG718_RS36565 (OG718_36550) - 8193192..8193500 (-) 309 WP_143631832.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69463.92 Da        Isoelectric Point: 5.6971

>NTDB_id=653035 OG718_RS36550 WP_328846217.1 8187845..8189773(-) (rcrQ) [Streptomyces sp. NBC_00258]
MAGPMGRMMAGTGPDHHSMDFKGSGKRLLAHFKPERTTLYVMLVAVVFSVGLSVLGPKILGRATDLVFAGVVGREMPAGQ
TKAEALAAMRERGDGGMADMLSGTDFTPGKGIDFGAVGEVLLLALVAFLVAGLLMTVATRLVNRAVNKTMYNMREDVQTK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLVNSLLTIVGVLAMMFWVSWLLALVALVTVPLSFVVATRVGK
RSQPHFVQQWRTTGKLNAHIEEMYTGHNLVKVFGRQDESAAQFAEENEKLYEAGFRAQFNSGVMQPLMMFVSNLNYVLVA
VVGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQEADPVTGARPEELRGRVALE
GVSFRYDPEKPLIEDLSLKVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVDIAKMSRDELRAGIGMVLQDT
WLFGGSIAENIAYGASREVTRGEIEEAARAAHADRFVRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHTDLLAANGAYARLYKAQFAEAVVE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=653035 OG718_RS36550 WP_328846217.1 8187845..8189773(-) (rcrQ) [Streptomyces sp. NBC_00258]
ATGGCCGGGCCCATGGGGCGGATGATGGCCGGGACGGGCCCCGACCATCACTCGATGGACTTCAAGGGGTCCGGGAAGCG
GCTGCTGGCGCATTTCAAGCCGGAACGCACCACTCTGTACGTGATGCTCGTCGCCGTGGTGTTCAGCGTCGGCCTGTCGG
TCCTCGGGCCGAAGATCCTGGGCCGGGCCACCGACCTCGTCTTCGCCGGGGTCGTCGGACGGGAGATGCCCGCGGGGCAG
ACGAAGGCCGAGGCCCTCGCGGCGATGCGGGAGCGCGGCGACGGCGGCATGGCCGACATGCTCTCCGGGACGGACTTCAC
CCCGGGCAAGGGCATCGACTTCGGCGCGGTCGGCGAGGTGCTGCTGCTCGCTCTCGTGGCGTTCCTGGTGGCCGGTCTGC
TGATGACCGTGGCGACGCGGCTGGTGAACCGGGCCGTCAACAAGACGATGTACAACATGCGCGAGGACGTGCAGACGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGGCAGCGCGGTGAGGTGCTCAGCCGCGCCACGAACGACATCGACAA
CATCGGGCAGACCCTCCAGCAGTCGATGGGCCAGCTGGTCAACTCGCTGCTGACGATCGTCGGTGTGCTGGCGATGATGT
TCTGGGTGTCGTGGCTGCTCGCGCTCGTCGCGCTGGTCACCGTGCCGCTGTCGTTCGTCGTCGCCACCCGGGTGGGCAAG
CGGTCGCAGCCGCACTTCGTGCAGCAGTGGCGGACCACCGGCAAGCTCAACGCGCACATCGAGGAGATGTACACCGGCCA
CAACCTCGTCAAGGTCTTCGGGCGGCAGGACGAGTCGGCGGCACAGTTCGCCGAGGAGAACGAGAAGCTGTACGAGGCCG
GGTTCCGGGCGCAGTTCAACAGCGGGGTCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTATGTGCTGGTGGCC
GTGGTCGGCGGTCTGCGCGTCGCGTCGGGCGCCCTCTCGATCGGTGACGTCCAGGCCTTCATCCAGTACTCCCGGCAGTT
CTCCATGCCGCTCACCCAGGTCGCCTCGATGGCGAACCTCGTGCAGTCCGGGGTCGCTTCGGCGGAGCGGATCTTCGAAC
TGCTGGACGCGGAGGAGCAGGAGGCCGACCCGGTGACGGGCGCGCGTCCGGAGGAACTCCGGGGCCGGGTGGCGCTGGAG
GGGGTCTCCTTCCGGTACGACCCGGAGAAGCCGCTCATCGAGGACCTGTCGCTGAAGGTGGAGCCGGGGCACACGGTCGC
CATCGTCGGGCCGACGGGCGCCGGCAAGACCACGCTCGTGAACCTGCTGATGCGGTTCTACGAGGTCACGGGCGGGCGTA
TCACCCTCGACGGGGTCGACATCGCGAAGATGTCCCGGGACGAACTGCGGGCCGGGATCGGCATGGTGCTGCAGGACACC
TGGCTGTTCGGCGGTTCGATCGCGGAGAACATCGCGTACGGGGCCTCCCGGGAGGTCACCCGTGGGGAGATCGAGGAGGC
GGCTCGGGCCGCCCATGCCGACCGGTTCGTCCGGACGTTGCCCGACGGGTACGACACCGTCATCGACGACGAGGGGTCGG
GGGTGAGTGCGGGTGAGAAGCAGCTGATCACCATCGCTCGGGCGTTCCTGTCCGATCCGGTGATCCTTGTGCTGGACGAG
GCGACGAGTTCGGTGGACACCCGTACCGAGGTGCTCATCCAGAAGGCGATGGCGAAGCTCGCGCACGGGCGGACGTCGTT
CGTCATCGCGCATCGTCTGTCGACGATCCGCGATGCCGACACCATTCTCGTGATGGAGAACGGGTCGATCGTGGAACAGG
GCGCCCACACGGACCTGCTGGCCGCGAACGGCGCGTACGCCCGCCTGTACAAGGCCCAGTTCGCGGAGGCTGTGGTGGAG
GTGGACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(41-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.194

96.106

0.386