Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG718_RS36130 Genome accession   NZ_CP108081
Coordinates   8091039..8091710 (+) Length   223 a.a.
NCBI ID   WP_143632018.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00258     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8086039..8096710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG718_RS36115 (OG718_36100) - 8086450..8087160 (+) 711 WP_143632021.1 TerB family tellurite resistance protein -
  OG718_RS36120 (OG718_36105) - 8087447..8089549 (+) 2103 WP_143632020.1 MMPL family transporter -
  OG718_RS36125 (OG718_36110) - 8089771..8091042 (+) 1272 WP_328847887.1 histidine kinase -
  OG718_RS36130 (OG718_36115) vraR 8091039..8091710 (+) 672 WP_143632018.1 response regulator transcription factor Regulator
  OG718_RS36135 (OG718_36120) - 8091949..8093112 (+) 1164 WP_328847888.1 sialidase family protein -
  OG718_RS36140 (OG718_36125) - 8093323..8094258 (-) 936 WP_328846178.1 dihydrodipicolinate synthase family protein -
  OG718_RS36145 (OG718_36130) - 8094290..8095360 (-) 1071 WP_328846179.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 23451.99 Da        Isoelectric Point: 4.8164

>NTDB_id=653034 OG718_RS36130 WP_143632018.1 8091039..8091710(+) (vraR) [Streptomyces sp. NBC_00258]
MTIRVLLADDQNLVRASFAMLVSSAEDMEVVAEAGTGREAVALARSARADLVVMDIRMPDLDGIEATRLIAADEDLAGVK
VLVLTTYDTDEHIVEALRAGASGFLVKDIRPAELLDAIRTVAAGESLLSPGPTSRLIARFLRAPDTATTSAVGGPSKLSE
RERQVLSLVARGLNNTEIADALGLSPLTAKTHVSRIMGKLGARDRAQLVIVAYESGLVIPGAA

Nucleotide


Download         Length: 672 bp        

>NTDB_id=653034 OG718_RS36130 WP_143632018.1 8091039..8091710(+) (vraR) [Streptomyces sp. NBC_00258]
ATGACGATCCGCGTATTGCTGGCCGACGACCAGAATCTTGTACGGGCATCCTTCGCGATGCTCGTCTCGTCGGCGGAGGA
CATGGAGGTCGTCGCCGAGGCGGGGACCGGGCGGGAGGCCGTGGCGCTGGCCCGGTCGGCTCGGGCCGATCTCGTCGTGA
TGGACATCCGCATGCCCGACCTGGACGGGATCGAGGCGACCCGGCTCATCGCCGCCGACGAGGATCTCGCGGGTGTGAAG
GTGCTCGTCCTGACGACGTACGACACCGACGAGCACATCGTCGAGGCACTGCGGGCCGGGGCGTCCGGTTTCCTCGTGAA
GGACATCCGGCCGGCCGAACTCCTCGACGCCATCCGGACGGTGGCCGCGGGGGAGTCACTCCTCTCGCCCGGTCCCACCT
CGCGGCTCATCGCCCGCTTTCTGCGCGCGCCGGACACCGCGACGACGTCCGCGGTGGGCGGGCCGAGCAAGCTGTCCGAG
CGGGAACGACAGGTGCTCTCGCTGGTCGCGCGCGGTCTCAACAACACGGAGATCGCCGACGCGTTGGGACTCAGTCCGCT
GACCGCGAAGACCCATGTCAGCCGGATCATGGGCAAGTTGGGAGCGCGGGACCGGGCGCAGCTGGTGATCGTGGCGTACG
AGTCGGGGCTTGTGATACCCGGGGCCGCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(157-212)

Response regulator receiver domain (Response_reg)

(5-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.615

97.758

0.368